Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1133
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26550.1 68415.m03185 heme oxygenase 2 (HO2) similar to heme ...    33   0.19 
At1g54510.1 68414.m06217 protein kinase family protein contains ...    31   0.58 
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    31   0.76 
At3g48480.1 68416.m05292 hypothetical protein                          30   1.8  
At1g36756.1 68414.m04573 hypothetical protein                          29   4.1  
At3g05910.1 68416.m00666 pectinacetylesterase, putative similar ...    28   7.1  
At5g06530.2 68418.m00737 ABC transporter family protein                27   9.4  
At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR...    27   9.4  
At2g30000.1 68415.m03650 expressed protein contains Pfam domain ...    27   9.4  
At1g07170.1 68414.m00763 expressed protein contains Pfam domain ...    27   9.4  

>At2g26550.1 68415.m03185 heme oxygenase 2 (HO2) similar to heme
           oxygenase 2 [Arabidopsis thaliana]
           gi|4530595|gb|AAD22109
          Length = 354

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 19/68 (27%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
 Frame = +3

Query: 291 LYRKKAFEQDLQHYLGDNWRSIPK-SLALENYLQHLQDLERDNPKLLMAYVYHLYLGLLS 467
           L R ++ E+DLQ +L +    IP+ S    +Y ++L++   ++  L +++ Y +Y   ++
Sbjct: 167 LERCESIEKDLQ-WLREQDLVIPEPSNVGVSYAKYLEEQAGESAPLFLSHFYSIYFSHIA 225

Query: 468 GGQILSKK 491
           GGQ+L ++
Sbjct: 226 GGQVLVRQ 233


>At1g54510.1 68414.m06217 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 612

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 75  EQDLFTTRM-RKATRKIHSVSDALVNAKFAISLRDHTVWGG 194
           EQD+F T M RK + K  SVSD  +  K   +++ HT W G
Sbjct: 455 EQDIFFTPMQRKTSSKSSSVSDRSI-TKDKCTVQTHTTWQG 494


>At1g79280.1 68414.m09242 expressed protein weak similarity to
           Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
 Frame = +3

Query: 321 LQHYLGDNWRSIPKSLALENYLQHLQDLERDNP-KLLMAYVYHLYLGLLSGGQILSKKRR 497
           LQ    D    + +S A ++ L HLQ +E+D   + +   +  L+       ++L +K  
Sbjct: 78  LQSDFDDRLAELAQSQAQKHQL-HLQSIEKDGEVERMSTEMSELHKSKRQLMELLEQKDA 136

Query: 498 VFGEKNEQPNTYVDKVTDLAAVDISKLKNEFREAMNQIATTMS 626
              EKN    +Y+DK+  L     S+ +    EA  ++A + +
Sbjct: 137 EISEKNSTIKSYLDKIVKLTDTS-SEKEARLAEATAELARSQA 178


>At3g48480.1 68416.m05292 hypothetical protein
          Length = 169

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 195 GLFVFYHIFAYLEDAKERLNMPEFNKLFVHEILYRKKAFEQ--DLQHYLG 338
           G FV Y+I  ++EDA E  N+ +    F+ E  +  K  E+  D  H LG
Sbjct: 118 GSFVLYYIHRFIEDAPENFNVEDM-PYFLKEDWFSHKDLEKFCDELHSLG 166


>At1g36756.1 68414.m04573 hypothetical protein
          Length = 129

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +3

Query: 150 AKFAISLRDHTVWGGGLFVFYHIFAYLEDAKERLNMPEFNKLFVHEILYRKKAFEQDL 323
           A ++ SL D     GG   FY I A LE+A +R   P ++ L++  +L + +   QDL
Sbjct: 55  AIYSTSLLDPGSHRGGSR-FYSIKAALEEATDRSTCPSYSILYLTPLLDQGRPTLQDL 111


>At3g05910.1 68416.m00666 pectinacetylesterase, putative similar to
           pectinacetylesterase precursor GI:1431629 from [Vigna
           radiata]
          Length = 415

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 23/72 (31%), Positives = 32/72 (44%)
 Frame = -2

Query: 305 LLSVKNFMHKQLIKFWHI*SLFCIFKICKNVVEDKQASTPYCMVSQRYRKLRIDQGIADR 126
           L SVKN + +      H+    C F   +N++   Q  TP  +V+  Y   +I   IA  
Sbjct: 251 LQSVKNNLPRICTN--HLDPTSCFFP--QNLIS--QMKTPLFIVNAAYDTWQIQSSIAPT 304

Query: 125 MYFPSRFSHACR 90
              PS F H CR
Sbjct: 305 SADPSGFWHDCR 316


>At5g06530.2 68418.m00737 ABC transporter family protein
          Length = 691

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 577 NLLMSTAAKSVTLSTYVFGCSFFSPNTLLFLDKIC 473
           +L  +T   SVT+ T++    FF   + LFLD +C
Sbjct: 656 DLKKATTLASVTVMTFMLAGGFFVKASPLFLDFLC 690


>At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1039

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 255 MPEFNKLFVHEILYRKKAFEQDLQHY 332
           +P F K+   ++ Y+K +FE  LQHY
Sbjct: 105 VPIFYKVEPSDVRYQKNSFEVKLQHY 130


>At2g30000.1 68415.m03650 expressed protein contains Pfam domain
           PF03660: Uncharacterised protein family (UPF0123)
          Length = 110

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 128 CQRCLGQCEVCDIVERPYSM 187
           C++C G+C +CD   RP ++
Sbjct: 23  CEKCDGKCVICDSYVRPCTL 42


>At1g07170.1 68414.m00763 expressed protein contains Pfam domain
           PF03660: Uncharacterised protein family (UPF0123)
          Length = 110

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 128 CQRCLGQCEVCDIVERPYSM 187
           C++C G+C +CD   RP ++
Sbjct: 23  CEKCDGKCVICDSYVRPCTL 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,928,171
Number of Sequences: 28952
Number of extensions: 325499
Number of successful extensions: 873
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)