Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1123
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   4.6  
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p...    25   6.1  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.0  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 170 RRSSLLATPHSSYLLSLCNGPT**SARPAVTRSFTRACATGPST 301
           R++SLL + HSSY   L   PT  S   ++ R +       PST
Sbjct: 490 RKTSLLGSNHSSYSDKL-GSPTILSTSFSLARPYPEPALVSPST 532


>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 413 GMAGSHHTNLSGYILKPLSIPGVYER-NAASAVSNMRPKLRAQLRMPW*MIELRRVL 246
           G+ GS+ ++L    +K   +  V +  N  S V   RP+    +  PW   E +++L
Sbjct: 38  GLDGSYASSLYTAAVKESKLDNVEKALNKLSGVLQQRPEFEQYISSPWLTREDKKIL 94


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = +2

Query: 149 NGPTVTARRSSLLATPHSSYLLSLC----NGPT**SARPAVTRSFTRACATGPSTLVSY 313
           NGPT          TPHS++L S      +GPT   + P  T S + A A G S    Y
Sbjct: 359 NGPTAVNGLPMNSYTPHSNHLHSPSPNSNSGPTDSLSAPNSTSSPSMAHANGASFASQY 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,673
Number of Sequences: 5004
Number of extensions: 50152
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)