Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1123
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0017 + 13821348-13823404,13823546-13823819,13823916-138242... 29 2.0
10_08_0886 + 21307977-21308007,21308113-21308240 29 2.7
01_03_0208 + 13797780-13797931,13798234-13798288,13798807-13799943 29 2.7
05_07_0305 - 29097478-29097598,29097766-29097866,29098136-290982... 29 3.5
02_05_0237 + 27095817-27097433 29 3.5
01_01_1006 - 7972645-7973811 28 4.7
02_04_0274 - 21455942-21456325,21456453-21456521,21456622-214566... 28 6.2
11_04_0426 - 17573681-17574010,17574163-17574282,17574382-175747... 27 8.2
08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626 27 8.2
07_02_0031 - 12035450-12035709,12036186-12036699 27 8.2
>09_04_0017 +
13821348-13823404,13823546-13823819,13823916-13824238,
13824491-13824604,13825357-13825422,13825638-13825764
Length = 986
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/71 (26%), Positives = 28/71 (39%)
Frame = +1
Query: 103 WDSKAINDLTDSYGQEWTYRDRKALEFTCHTAFFVSIVVVQWADLIICKTRRNSIIHQGM 282
W+ A+ D DS + K L H + + V WA+ + R + H
Sbjct: 520 WNIDAVADAMDSALE--MPEGEKVLRHEKHHKYVSTHDVGYWANSFLQDLERTCLDHSRR 577
Query: 283 RNWALNFGLIF 315
R W + FGL F
Sbjct: 578 RCWGIGFGLRF 588
>10_08_0886 + 21307977-21308007,21308113-21308240
Length = 52
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 486 EPAAGVAAQVEAPDLVVDEDGQHERNGGQPPHELEWV 376
+PAA A Q E DG HER G P + +W+
Sbjct: 8 KPAAVAAPQRERGGRGAAADGVHEREAGDRPAKAQWM 44
>01_03_0208 + 13797780-13797931,13798234-13798288,13798807-13799943
Length = 447
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 379 PLKFVWWLPAIPFMLSIFIYDEIRRF 456
PLK WL +IP++LS F++ IR F
Sbjct: 314 PLKEAAWLVSIPWILSFFVWLFIRLF 339
>05_07_0305 -
29097478-29097598,29097766-29097866,29098136-29098288,
29098404-29098542,29098649-29098719,29099022-29099333,
29099605-29099903,29100011-29100271,29100365-29100471,
29100588-29100739,29100816-29100970,29102946-29103141,
29103340-29103468,29103540-29103641,29103736-29103889,
29103970-29104058
Length = 846
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +1
Query: 136 SYGQEWTYRDRKALEFTCHTAFFVSIVVVQWADLIICKTRRNSIIHQGMRNWALN 300
+Y + + D+ + +T FVS V QW DL +RRN H GM LN
Sbjct: 479 AYSRSCSTEDKPMMNWTKLVKAFVS-VKFQWPDLKDTVSRRNVCEHCGMSRDFLN 532
>02_05_0237 + 27095817-27097433
Length = 538
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 169 KALEFTCHTAFFVSIVVVQWADLIICKTRRNSIIHQ 276
KA E + A+FVS V ++C+ RN + HQ
Sbjct: 501 KAFETAYNNAWFVSFFVAGAVYCLLCRRNRNELKHQ 536
>01_01_1006 - 7972645-7973811
Length = 388
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 265 IIHQGMRNWA-LNFGLIFETALAAFLSYTPGMDKGLRMYPL 384
++HQ M W L++GL+ + A PG+ LR PL
Sbjct: 204 VVHQMMIWWVDLSYGLLADLAFDQLRRVVPGIHHDLRFIPL 244
>02_04_0274 -
21455942-21456325,21456453-21456521,21456622-21456687,
21456796-21456861,21456982-21457149,21457262-21457351,
21457578-21457622,21458112-21458747
Length = 507
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -2
Query: 488 SSQPPGLXXXXXRLISS*MKMDNMNGMAGSHHTNLSGYILKPLS 357
SSQP L I S +++D +G HH NLS I PL+
Sbjct: 205 SSQPHHLNQHVTPSIDS-LQIDQKEFSSGLHHLNLSSLISGPLA 247
>11_04_0426 -
17573681-17574010,17574163-17574282,17574382-17574754,
17575051-17575087,17575821-17575872
Length = 303
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +1
Query: 289 WALNFGLIFETALAAFLSYTPGMDKGLRMYPLKFVWWLPAIPFMLSIF 432
WA FGL+ + +F++Y + R+Y K ++P+++++F
Sbjct: 10 WAFAFGLLGN--IISFMTYLAPLPTFYRIYKSKSTQGFQSVPYVVALF 55
>08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626
Length = 369
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 178 RAPCGHGRSIPVRRSQSNR*WPSSPTAS*YRKASSGG 68
RA G G V+R WP S TA+ R +++GG
Sbjct: 2 RAEMGGGGKAEVKRGGLRAEWPRSSTAAGERTSTAGG 38
>07_02_0031 - 12035450-12035709,12036186-12036699
Length = 257
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 453 APDLVVDEDGQHERNGGQPPHELEW 379
AP + D QH R+ G PP EW
Sbjct: 205 APHDIQRTDNQHPRSSGVPPSPSEW 229
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,609,995
Number of Sequences: 37544
Number of extensions: 397758
Number of successful extensions: 1116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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