Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1123
(579 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 204 4e-53
SB_53499| Best HMM Match : Cation_ATPase_C (HMM E-Value=2e-23) 177 7e-45
SB_42324| Best HMM Match : No HMM Matches (HMM E-Value=.) 151 4e-37
SB_24715| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_56650| Best HMM Match : AgrB (HMM E-Value=0.57) 29 2.1
SB_13770| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_40279| Best HMM Match : zf-MYM (HMM E-Value=0.66) 29 3.6
SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 28 4.8
SB_37175| Best HMM Match : GvpH (HMM E-Value=2.5) 28 4.8
SB_39661| Best HMM Match : KOW (HMM E-Value=1.1e-07) 28 4.8
SB_831| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_51425| Best HMM Match : Fez1 (HMM E-Value=0.94) 27 8.4
SB_27573| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_15242| Best HMM Match : E2F_TDP (HMM E-Value=6e-14) 27 8.4
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
>SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 1003
Score = 204 bits (498), Expect = 4e-53
Identities = 92/126 (73%), Positives = 102/126 (80%)
Frame = +1
Query: 16 QAAAGFFVYFVIMAENGFLPMKLFGIRKQWDSKAINDLTDSYGQEWTYRDRKALEFTCHT 195
+A+AGFF YFVIMAENGF P LFG+R+QWD K + + DSYGQEW Y RK LE+TCHT
Sbjct: 779 KASAGFFTYFVIMAENGFRPSLLFGLRRQWDDKYNHSVVDSYGQEWGYSQRKILEYTCHT 838
Query: 196 AFFVSIVVVQWADLIICKTRRNSIIHQGMRNWALNFGLIFETALAAFLSYTPGMDKGLRM 375
AFFVSIV+VQWADLIICKTRRNS+ QGM N LNFGL FETALAAF SYTPGM GLRM
Sbjct: 839 AFFVSIVIVQWADLIICKTRRNSLFTQGMTNKFLNFGLFFETALAAFFSYTPGMSNGLRM 898
Query: 376 YPLKFV 393
YPL +
Sbjct: 899 YPLNHI 904
>SB_53499| Best HMM Match : Cation_ATPase_C (HMM E-Value=2e-23)
Length = 109
Score = 177 bits (430), Expect = 7e-45
Identities = 80/107 (74%), Positives = 87/107 (81%)
Frame = +1
Query: 157 YRDRKALEFTCHTAFFVSIVVVQWADLIICKTRRNSIIHQGMRNWALNFGLIFETALAAF 336
Y RK LE+TCHTAFFVSIV+VQWADLIICKTRRNS+ QGM N LNFGL FETALAAF
Sbjct: 2 YSQRKILEYTCHTAFFVSIVIVQWADLIICKTRRNSLFTQGMTNKFLNFGLFFETALAAF 61
Query: 337 LSYTPGMDKGLRMYPLKFVWWLPAIPFMLSIFIYDEIRRFYLRRNPG 477
SYTPGM GLRMYPL + WW PA+PF L I+IYDE RR+ LRR PG
Sbjct: 62 FSYTPGMSNGLRMYPLNWQWWFPAMPFSLIIWIYDECRRWILRRYPG 108
>SB_42324| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 151 bits (366), Expect = 4e-37
Identities = 70/95 (73%), Positives = 76/95 (80%)
Frame = +1
Query: 1 EIGMIQAAAGFFVYFVIMAENGFLPMKLFGIRKQWDSKAINDLTDSYGQEWTYRDRKALE 180
+IG +QA+AGF YFVIMAENGFLP LF IR W+ K N L DSYGQEW Y RK LE
Sbjct: 312 QIGFMQASAGFLTYFVIMAENGFLPGDLFNIRGLWEDKTNNTLLDSYGQEWGYAQRKVLE 371
Query: 181 FTCHTAFFVSIVVVQWADLIICKTRRNSIIHQGMR 285
FTCH+AFFVSIVVVQWADLIICKTRRNSII Q M+
Sbjct: 372 FTCHSAFFVSIVVVQWADLIICKTRRNSIITQKMK 406
Score = 102 bits (245), Expect = 2e-22
Identities = 43/73 (58%), Positives = 53/73 (72%)
Frame = +1
Query: 286 NWALNFGLIFETALAAFLSYTPGMDKGLRMYPLKFVWWLPAIPFMLSIFIYDEIRRFYLR 465
N L GLIFETALAAFL YTPG+ L +Y L WW +P+ + IF+YDE+RR+ LR
Sbjct: 451 NHILIIGLIFETALAAFLLYTPGLSTALSLYGLNASWWFIGVPYSILIFVYDEVRRYILR 510
Query: 466 RNPGGWLEQETYY 504
+ PGGW+EQETYY
Sbjct: 511 KYPGGWVEQETYY 523
>SB_24715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 30.7 bits (66), Expect = 0.90
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 251 VLQIIKSAHCTTTIDTKNAVWQVNSSALRSR*VHS 147
V+ + C+ DTKN W VNS+ LR +H+
Sbjct: 121 VIHKVNDRECSGVQDTKNIFWSVNSTDLRLTFLHT 155
>SB_56650| Best HMM Match : AgrB (HMM E-Value=0.57)
Length = 246
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = +1
Query: 202 FVSIVVVQWADLIICKTRRNSIIHQGMRNWALNFGLIFETALAAFLS 342
F I+ V + DLI KT +N +R AL GLIFET L F +
Sbjct: 102 FTYIISVLYVDLIETKTDQN------VRLSALGIGLIFETFLLTFFA 142
>SB_13770| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +1
Query: 250 TRRNSIIHQGMRNWALNFGLIFETALA-AFLSY--TPGMDKGLRMYPLKFVWWLPAIPFM 420
TR NSII + ++ +N +F +FL TP + R W++ F
Sbjct: 115 TRLNSII---VTSYCMNLTAVFARGFPESFLLMHSTPQKKRNFRFRERSMKWFIIVAYFY 171
Query: 421 LSIFIYDEIRRFY 459
L +F++ I+ FY
Sbjct: 172 LHVFVFSVIQSFY 184
>SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 658
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -1
Query: 303 KVEGPVAHALVNDRVTAGLADYQVGPLHNDNRYEECGVASK 181
K GP + AD Q GPLHND++Y + +
Sbjct: 162 KPRGPALNKQAAQTQIQDKADSQYGPLHNDHQYHSLALQDR 202
>SB_40279| Best HMM Match : zf-MYM (HMM E-Value=0.66)
Length = 364
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 531 TVDSDRRCLIISLLFEPAAGVAAQVE-APDLVVDEDGQHERNGGQPPHELEWVHPQ 367
T D+D + LL EP V Q++ A + ++ E+G GG+ +E E H Q
Sbjct: 263 TDDADDSTVSGILLPEPGVNVRDQIQSAVERLISEEGNDNHAGGEVNNEGEEAHRQ 318
>SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 73 PMKLFGIRKQWDSKAINDLTDSYGQEWTYRDRKAL 177
P L + W SK+ D+T +Y + W +R R L
Sbjct: 577 PRALAIAERLWSSKSTTDMTSAYARIWEHRCRYLL 611
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 87 EKLHREESVFSHDHEVDEEASRGLDHSD 4
E HR ES+ +DH E AS +D+SD
Sbjct: 1739 EICHRVESISDNDHVDKERASTPIDNSD 1766
>SB_37175| Best HMM Match : GvpH (HMM E-Value=2.5)
Length = 340
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 87 EKLHREESVFSHDHEVDEEASRGLDHSD 4
E HR ES+ +DH E AS +D+SD
Sbjct: 170 EICHRVESISDNDHVDKERASTPIDNSD 197
>SB_39661| Best HMM Match : KOW (HMM E-Value=1.1e-07)
Length = 487
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 196 AFFVSIVVVQWADLIICKTRRNSIIHQGMRNWALNFGLIFETALAAFLSYTPGMDKG 366
AF S +V++ + +I+CKT R+ ++ G +N FG A A+ +P D G
Sbjct: 63 AFLYSKMVIENSGIIVCKT-RHVVLAGGGKNATTGFGGFGTFAPASPRISSPARDGG 118
>SB_831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Frame = -1
Query: 237 QVGPLHNDNRYEECGVASKLERLAVTVGPFLSV--GVSQIVDGLRVPLLPDTEKLHREES 64
Q+ +D E G S L+ LS G+ + + L L E++ +E
Sbjct: 3 QIKDQTDDAEERELGAKSLLKEAEAKEEQLLSEASGIQRRITLLNSELEKTNERVEEQEK 62
Query: 63 VFS---HDHEVDEEASRGLDHSD 4
+ H+ E++EEA +GL+ S+
Sbjct: 63 LLQNLVHNSEMNEEARKGLEESE 85
>SB_51425| Best HMM Match : Fez1 (HMM E-Value=0.94)
Length = 326
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 445 IRRFYLRRNPGGWLEQETYY*TAPITVHRRASVS 546
IRR +RRN G L +E+ + + ++V R +S S
Sbjct: 14 IRRIQMRRNDTGSLSRESSFSSTELSVSRNSSFS 47
>SB_27573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 410
Score = 27.5 bits (58), Expect = 8.4
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 3/100 (3%)
Frame = -1
Query: 528 VDSDRRCLIISLLFEPAAGVAAQVEAPDLVVDEDGQHERNGGQPPHELEWVHPQALVHTG 349
VD+DR +II G+ +V+D +E+NG + + HP +H
Sbjct: 119 VDADREKVIIE-------GIIRNNAVSGIVIDSIKFYEKNGMPVTRKYTYTHPDTKMHVH 171
Query: 348 SVRE---ERRQRGFKYETKVEGPVAHALVNDRVTAGLADY 238
+ R R + KY ++ HA+ R G Y
Sbjct: 172 APRHANARTRTQSRKYTYTLQ---KHAITRTRTKTGKYTY 208
>SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1184
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = -1
Query: 432 EDGQHERNGGQPPHELEWVHPQALVHTGSV 343
E GQH R P E W +A H G +
Sbjct: 814 EKGQHMRQDSMEPDERAWEEMRATCHCGDI 843
>SB_15242| Best HMM Match : E2F_TDP (HMM E-Value=6e-14)
Length = 273
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Frame = +2
Query: 245 ARPAVTRSFTRACATGPST-----LVSYLKPRWR-RSSRTLPVWT 361
A P FTR+CA+G T L S L+ WR R+S + +W+
Sbjct: 190 AHPNEIEEFTRSCASGLVTTEREGLNSSLRHAWRMRTSPQIDIWS 234
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 27.5 bits (58), Expect = 8.4
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Frame = +2
Query: 107 TRRPSTI*LTPTDRNGPTVTARRSSLLATPHSSYLLSLCNGPT**SARPAVTR----SFT 274
T R + TP+ R G RSS +P +S+ A +TR SFT
Sbjct: 5911 TTRTPEVKATPSRRGGAVSRIPRSSPAGSPATSFTRERSRDKLSGPAAATLTRERSPSFT 5970
Query: 275 RACATGPSTLVSYLKPRWR 331
R+ + + VS+L RW+
Sbjct: 5971 RS-GSAHNPAVSHLSKRWQ 5988
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,327,521
Number of Sequences: 59808
Number of extensions: 429349
Number of successful extensions: 1066
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -