Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1123
         (579 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    26   1.0  
AJ439060-9|CAD27760.1|  348|Anopheles gambiae putative translati...    26   1.0  
CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein ...    25   1.3  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    25   1.3  
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    25   1.3  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    24   4.1  
AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic acetylch...    23   5.4  
U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.             23   9.5  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    23   9.5  

>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 519 DRRCLIISLLFEPAAGVAAQVEAPDLVV 436
           DR CLII   F   A +A    AP ++V
Sbjct: 505 DRLCLIIFTFFTIVATIAVLFSAPHIIV 532


>AJ439060-9|CAD27760.1|  348|Anopheles gambiae putative translation
           initiation factor protein.
          Length = 348

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -1

Query: 474 GVAAQVEAPDLVVD---EDGQHERNGGQPPHELEWVHPQALVHTG 349
           GV   V AP   +D   EDG H +   +P HEL  +  Q +   G
Sbjct: 266 GVPFYVAAPFTSIDVAIEDGSHIKIEERPEHELTHIGGQRIAAPG 310


>CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein
           protein.
          Length = 615

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 129 QIVDGLRVPLLPDTEKLHREESVFSHDHEVDEEAS 25
           Q++  +R PLL D EKL +     + + + D E+S
Sbjct: 30  QLLPAVRRPLLSDAEKLEQRLLAPNRNADFDNESS 64


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 519 DRRCLIISLLFEPAAGVAAQVEAPDLVV 436
           DR CLII  LF   A +A    AP  +V
Sbjct: 481 DRLCLIIFTLFTIIATLAVLFSAPHFIV 508


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = -1

Query: 426 GQHERNGGQPPHELEW---VH-PQALVHTGSVREERRQRGFKYET 304
           G   + GG PPH   W   VH  Q+ V+     + +R    +Y+T
Sbjct: 248 GSSSKKGGPPPHIYPWMKRVHIGQSTVNANGETKRQRTSYTRYQT 292


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 265 IIHQGMRNWALNFGL 309
           I H  +RNWA+ FG+
Sbjct: 45  IPHNEVRNWAIRFGV 59


>AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 9 protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 180 LERLAVTVGPFLSVG 136
           L+RLA  VGPF+ VG
Sbjct: 343 LKRLAGCVGPFVGVG 357


>U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.
          Length = 278

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 210 RYEECGVASKLERLAVTVGPFLSVGVSQIVDGLRVPLL 97
           R+    +AS ++ L +   PF+ V V Q++ G   PLL
Sbjct: 71  RFLRLAMASIMDILKIK--PFVEVSVGQLLWGYEDPLL 106


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1099

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 459  PAPQPRRLARTRDLLLNSA 515
            P P PR  AR  DL L  A
Sbjct: 1071 PPPSPRTAARRADLRLRQA 1089


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 648,782
Number of Sequences: 2352
Number of extensions: 13471
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55086417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)