Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1123
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    28   0.058
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   3.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   3.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 28.3 bits (60), Expect = 0.058
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 519 DRRCLIISLLFEPAAGVAAQVEAPDLVV 436
           DR CLII  LF   A +A  + AP ++V
Sbjct: 527 DRMCLIIFTLFTIIATIAVLLSAPHIIV 554


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 397 WLPAIPFMLSIFIYDEIRRFYLRRNPGGW 483
           WLP +   L   IY  IRR  L    GGW
Sbjct: 546 WLPLLRNRLDTLIYPIIRR-KLGSALGGW 573


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 97  KQWDSKAINDLTDSYGQEWTY 159
           K W +  I DLT S  ++ TY
Sbjct: 91  KPWSTLPIEDLTKSDNEDITY 111


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 97  KQWDSKAINDLTDSYGQEWTY 159
           K W +  I DLT S  ++ TY
Sbjct: 129 KPWSTLPIEDLTKSDNEDITY 149


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 134 TPTDRNGPTVTARRSSLLATPHSSYLLSLCNGP 232
           +P+ +   +   + +SLL++ HS+   SL  GP
Sbjct: 682 SPSSQAQASQCPQTASLLSSTHSTLARSLMEGP 714


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 131 LTPTDRNGPTVTARRSSLLATPHSSYLLS 217
           L   +RNGPT T   ++ L  P +  L S
Sbjct: 292 LLKKERNGPTQTTLNATTLFCPPNLRLTS 320


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 267 HSPGHAQLG 293
           H PGHAQ+G
Sbjct: 213 HLPGHAQMG 221


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 131 LTPTDRNGPTVTARRSSLLATPHSSYLLS 217
           L   +RNGPT T   ++ L  P +  L S
Sbjct: 382 LLKKERNGPTQTTLNATTLFCPPNLRLTS 410


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 386 LSGYILKPLSIPGVYERNAASAVSNMR 306
           + GY      + G+Y+ N AS ++  R
Sbjct: 617 MHGYASVVGPVKGIYQHNVASGLTKAR 643


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,243
Number of Sequences: 438
Number of extensions: 4072
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)