Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1123
(579 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR ... 31 0.73
At3g24390.1 68416.m03063 Ulp1 protease family protein contains P... 30 1.3
At2g36950.1 68415.m04531 heavy-metal-associated domain-containin... 29 1.7
At3g23270.1 68416.m02933 regulator of chromosome condensation (R... 29 2.2
At2g18700.1 68415.m02178 glycosyl transferase family 20 protein ... 28 5.2
At5g60820.1 68418.m07630 zinc finger (C3HC4-type RING finger) fa... 27 6.8
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot... 27 6.8
At3g54390.1 68416.m06013 expressed protein similar to 6b-interac... 27 6.8
At1g20530.1 68414.m02558 hypothetical protein 27 6.8
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 27 9.0
At1g10210.1 68414.m01151 mitogen-activated protein kinase, putat... 27 9.0
>At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 908
Score = 30.7 bits (66), Expect = 0.73
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -1
Query: 177 ERLAVTVGPFLSVGVSQIVDGLRVPLLPDTEKLHRE 70
+R++ +G S G+ QI+DG+R L + +++ RE
Sbjct: 117 KRISDVIGEMQSFGIQQIIDGVRSLSLQERQRVQRE 152
>At3g24390.1 68416.m03063 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At4g05280,
At1g25886, At4g03300
Length = 1139
Score = 29.9 bits (64), Expect = 1.3
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = -1
Query: 189 ASKLERLAVTVG-PFLSVGVSQIVDGLRVPLLPDTEKLHREESVFSHD---HEVDEEASR 22
+S+L R++ V P LSVG + + L VP PD+ K + + HD +E D A+
Sbjct: 544 SSRLTRVSHDVDTPALSVGCNSKEEDLDVPGEPDSNKEDMQGFIDEHDGANNESDFTAND 603
Query: 21 GLDHS 7
GL+ S
Sbjct: 604 GLNSS 608
>At2g36950.1 68415.m04531 heavy-metal-associated domain-containing
protein nearly identical to farnesylated protein ATFP2
[GI:4097545] Pfam profile PF00403:
Heavy-metal-associated domain
Length = 386
Score = 29.5 bits (63), Expect = 1.7
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = -1
Query: 480 AAGVAAQVEAPDLVVDEDGQHERNGGQPPHELEWVHPQALVHTGSVREERRQRGFKYETK 301
AA A+ EAP V+E + +GG+ E+ + G E++++ G E K
Sbjct: 236 AAAPDAKKEAPSAGVNEAKKEGSDGGEKKKEV-GDGGEKKKEGGDGGEKKKEAGDGGEKK 294
Query: 300 VEG---PVAHALVNDRVTAGLADYQVGPLH 220
+G P A+VN G + Y P+H
Sbjct: 295 KDGGGVPAPVAMVNKMDYYGYSAYPTAPMH 324
>At3g23270.1 68416.m02933 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1); similar to
zinc finger protein (GI:15811367) [Arabidopsis
thaliana]; similar to chromosome condensation regulator
protein (GI:22770461) [Cicer arietinum]
Length = 1045
Score = 29.1 bits (62), Expect = 2.2
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Frame = +1
Query: 160 RDRKALEFTCHTAFFVSIVVVQW---ADLIICKTRRNSIIHQGMRNWALNFGLIF----- 315
RDR +C + F SI + +W AD IC R + R+ N GL+
Sbjct: 574 RDRHVKSLSCGSNFTSSICIHKWVSGADQSICSGCRQAFGFTRKRHNCYNCGLVHCHACS 633
Query: 316 -ETALAAFLSYTPG 354
+ AL A L+ TPG
Sbjct: 634 SKKALKAALAPTPG 647
>At2g18700.1 68415.m02178 glycosyl transferase family 20 protein /
trehalose-phosphatase family protein similar to
trehalose-6-phosphate synthase SL-TPS/P [Selaginella
lepidophylla] GI:4100325; contains Pfam profiles
PF00982: Glycosyltransferase family 20, PF02358:
Trehalose-phosphatase
Length = 862
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +1
Query: 118 INDLTDSYGQEWTYRDR-KALEFTCHTAFFVSIVVVQWADLIICKTRRNSIIHQGMRNWA 294
I+ +T++ T D+ K L H + S V WA +R H R W
Sbjct: 491 IDAVTNAMSSAMTMSDKEKNLRHQKHHKYISSHNVAYWARSYDQDLQRACKDHYNKRFWG 550
Query: 295 LNFGLIFE 318
+ FGL F+
Sbjct: 551 VGFGLFFK 558
>At5g60820.1 68418.m07630 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 419
Score = 27.5 bits (58), Expect = 6.8
Identities = 25/94 (26%), Positives = 44/94 (46%)
Frame = -1
Query: 312 YETKVEGPVAHALVNDRVTAGLADYQVGPLHNDNRYEECGVASKLERLAVTVGPFLSVGV 133
+ +VE L ND G+ D++ + DN + G+ ++E V L V +
Sbjct: 91 FHQRVEQSQVTPLDND----GIDDFENYEMREDNVELDFGL--EMESGNGFVDSDLVVNL 144
Query: 132 SQIVDGLRVPLLPDTEKLHREESVFSHDHEVDEE 31
++ VDG+R+ + + + ES F D E D+E
Sbjct: 145 NEHVDGMRLLGIESGDVIVTVESCFDSDDEDDQE 178
>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
similar to SP|O35134 DNA-directed RNA polymerase I
largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
subunit) (RPA194) {Mus musculus}; contains InterPro
accession IPR000722: RNA polymerase, alpha subunit
Length = 1670
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -1
Query: 303 KVEGPVAHALVNDRVTAGLADYQVGPLHNDNRYEECG 193
KV P+ H V + GL D ++GP + CG
Sbjct: 47 KVTSPILHDNVGNPFPGGLYDLKLGPKDDKQACNSCG 83
>At3g54390.1 68416.m06013 expressed protein similar to
6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum]
GI:18149189
Length = 296
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 94 RKQWDSKAINDLTDSYGQEWTYRDRKALE 180
R +W A++ L ++Y +W R+R L+
Sbjct: 35 RDEWSEGAVSTLLEAYESKWVLRNRAKLK 63
>At1g20530.1 68414.m02558 hypothetical protein
Length = 614
Score = 27.5 bits (58), Expect = 6.8
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +2
Query: 164 TARRSSLLATPHSSYLLSLCNGPT**SARPAVTRSFTRACATGP 295
T RRS LA HS+YLLSL + PA+ R F A + P
Sbjct: 27 TLRRSYALADAHSAYLLSLN------TVGPALHRFFQHAVESPP 64
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1062
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +1
Query: 160 RDRKALEFTCHTAFFVSIVVVQWA---DLIICKTRRNSIIHQGMRNWALNFGLIF 315
+D++ C T F ++ + +WA D +C R + R+ N GL+F
Sbjct: 618 KDKQVKSIACGTNFTAAVCIHRWASGMDQSMCSGCRQPFSFKRKRHNCYNCGLVF 672
>At1g10210.1 68414.m01151 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK1) identical to mitogen-activated
protein kinase homolog 1 (AtMPK1)[Arabidopsis thaliana]
SWISS-PROT:Q39021; PMID:12119167
Length = 370
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -1
Query: 492 LFEPAAGVAAQVEAPDLVVDEDGQHERNGGQPPHELEWVHPQA 364
L++P A AQV DL VDED + E +E+ HPQA
Sbjct: 322 LYDPNANPPAQVPI-DLDVDEDLREEMIREMMWNEMLHYHPQA 363
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,261,313
Number of Sequences: 28952
Number of extensions: 284082
Number of successful extensions: 757
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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