Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1122
         (710 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   3.2  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.3  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   7.5  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   9.9  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   9.9  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   9.9  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 290 NLTNRSSTVVAGGHSSMSFPVLSGVP 367
           +L++ S+T+   GH   + P + GVP
Sbjct: 125 HLSSDSTTIHWHGHHQKNSPYMDGVP 150


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 389 LLFNAFINDIGSCFRSTKFYMFADDLK 469
           L+F  ++  +GS FRS++   F    K
Sbjct: 135 LIFAFWVPQLGSLFRSSRMCFFKSSKK 161


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 389 LLFNAFINDIGSCFRSTKFYMFADDLK 469
           L+F  ++  +GS FRS++   F    K
Sbjct: 135 LIFAFWVPQLGSLFRSSRMCFFKSSKK 161


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 389 LLFNAFINDIGSCFRSTKFYMFADDLK 469
           L+F  ++  +GS FRS++   F    K
Sbjct: 135 LIFAFWVPQLGSLFRSSRMCFFKSSKK 161


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 389 LLFNAFINDIGSCFRSTKFYMFADDLK 469
           L+F  ++  +GS FRS++   F    K
Sbjct: 135 LIFAFWVPQLGSLFRSSRMCFFKSSKK 161


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 319 CGGSLVDVLPSFVWGS-PRLSF 381
           C  SL+ V+P  VW S  ++SF
Sbjct: 281 CNMSLLTVIPIHVWTSKEKISF 302


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +1

Query: 214 VPKFVPRNNHSPIWF 258
           VPK    NN  P W+
Sbjct: 27  VPKITSTNNEVPRWY 41


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 561 LMPFALHQPNKLSKSL-CNNSESRDEFTFLKNFKSSANI 448
           L+   L Q NKL  +L CNN+ + + FT+     S A+I
Sbjct: 163 LVEHILVQTNKLVLALECNNT-TAEGFTYFLGNMSFAHI 200


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 561 LMPFALHQPNKLSKSL-CNNSESRDEFTFLKNFKSSANI 448
           L+   L Q NKL  +L CNN+ + + FT+     S A+I
Sbjct: 163 LVEHILVQTNKLVLALECNNT-TAEGFTYFLGNMSFAHI 200


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,405
Number of Sequences: 336
Number of extensions: 3829
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)