Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1122
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    27   2.6  
SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.6  
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    25   8.1  

>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 275 ERLKKNLTNRSSTVVAGGHSSMSFPVLSGVPQGSHLGPLLFNAFINDIGSCF 430
           E ++    +R    +  G+   + P+ S  P  +H+G L F+   ND+G  F
Sbjct: 63  ESVRSPPESRREGGMGSGYQRDAIPIPSEPPFTAHVGNLSFDLTENDLGDFF 114


>SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +3

Query: 306 RPRLLRGVTRRCPSQFCLGFPKALIWVLYFLMHSSTTLARVFVAQSS 446
           R R  RG+T    + + LGFP  L+  L+ L+     +AR FVA  S
Sbjct: 40  RIRPFRGLTSYRQASYSLGFPLGLLVFLHSLI-----VARFFVASKS 81


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 108 KLLYYEKPFHFEMFSLDRYIVY 173
           K+ ++EK FH E  +++ YIV+
Sbjct: 212 KVAFFEKKFHSERDTVNAYIVF 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,646
Number of Sequences: 5004
Number of extensions: 61739
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)