Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1122
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534...    29   4.8  
11_06_0316 + 22323814-22324692                                         28   6.4  
09_02_0442 - 9438617-9439381,9439463-9439693                           28   8.4  
09_02_0441 + 9433204-9433431,9433515-9434273                           28   8.4  

>11_01_0658 +
           5342508-5343602,5343697-5343764,5343994-5344042,
           5344217-5344333,5344438-5344506,5344631-5344725,
           5345580-5345658,5346499-5346563,5347368-5347461,
           5347675-5347744,5348363-5349357
          Length = 931

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 272 LERLKKNLTNRSSTVVAGGHSSMSFPVLSGVPQGSHLG 385
           L++ +  L      V AGG  S+SFP  S V  G+ LG
Sbjct: 102 LQQQRGGLDGAGDLVGAGGSDSLSFPSSSQVSLGNQLG 139


>11_06_0316 + 22323814-22324692
          Length = 292

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = +1

Query: 262 SILIRTLKEKFNEQ----IVHGCCGGSLVDVLPSFVWGSPRLSFGSSTF*CIHQRHWLVF 429
           S+++  LK  F       ++ G  GG+++ V P       R +FG +      Q+HW   
Sbjct: 27  SVIVAELKASFISSKPVAVLSGPGGGAILGVEPEQAVILNRAAFGHAVEIAAAQKHWFQL 86

Query: 430 S*HKVLYV 453
           S  +V Y+
Sbjct: 87  SPEEVFYL 94


>09_02_0442 - 9438617-9439381,9439463-9439693
          Length = 331

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 265 ILIRTLKEKFNEQIVHGCCGGSLVDVLPSFVWGSPRLS 378
           I+   L+ +F+E  V+GC GG L+D   +    SP LS
Sbjct: 62  IVAYLLRMQFHECAVNGCDGGLLIDGPGTEKTASPNLS 99


>09_02_0441 + 9433204-9433431,9433515-9434273
          Length = 328

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 265 ILIRTLKEKFNEQIVHGCCGGSLVDVLPSFVWGSPRLS 378
           I+   L+ +F+E  V+GC GG L+D   +    SP LS
Sbjct: 61  IVAYLLRMQFHECAVNGCDGGLLIDGPGTEKTASPNLS 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,011,427
Number of Sequences: 37544
Number of extensions: 380266
Number of successful extensions: 893
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)