Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1122
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 58 6e-09
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 56 2e-08
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 48 9e-06
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 43 2e-04
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 29 3.3
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 29 3.3
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 29 3.3
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z70212-6|CAA94166.1| 336|Caenorhabditis elegans Hypothetical pr... 29 3.3
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 29 3.3
Z74043-4|CAA98541.1| 733|Caenorhabditis elegans Hypothetical pr... 28 5.7
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 28 5.7
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 28 5.7
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 28 5.7
U67954-8|AAB52608.2| 782|Caenorhabditis elegans Sulfate permeas... 28 7.6
AY954524-1|AAX34432.2| 762|Caenorhabditis elegans anion transpo... 28 7.6
AY887909-1|AAX34421.1| 782|Caenorhabditis elegans anion transpo... 28 7.6
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 58.0 bits (134), Expect = 6e-09
Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +2
Query: 293 LTNRSSTVVAGGHSSMSFPVLSGVPQGSHLGPLLFNAFINDIGSCF-RSTKFYMFADDLK 469
L+NRS V G S GVPQG+ L PLLF ++NDI S FADD K
Sbjct: 54 LSNRSFRVRIGQTLSSRKFATCGVPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTK 113
Query: 470 FFRKVNSSLDSELLQRDLDSLFGWCSANGMSLNISK 577
+ + LQ LD++ W + ++LN SK
Sbjct: 114 LYASTPKTESENNLQSALDAVVDWTKGSKLTLNQSK 149
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 56.4 bits (130), Expect = 2e-08
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Frame = +2
Query: 284 KKNLTNRSSTVVAGGH-SSMSFPVLSGVPQGSHLGPLLFNAFINDIGSCFRST-KFYMFA 457
K+ L NR+ +V S S+P+ SGVPQGS GPLLF FIN++ T FA
Sbjct: 854 KEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINNLLIDLAPTINISCFA 913
Query: 458 DDLKFFRKVNSSLDSELLQRDLDSLFGWCSANGMSLNISKCYVIRF-TRKK 607
DD+K F D ++Q +D + W N + L +K ++ TR K
Sbjct: 914 DDVKIFH-----TDPTIIQNSIDIIVSWSKLNELPLAPTKSALLALGTRNK 959
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 47.6 bits (108), Expect = 9e-06
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Frame = +2
Query: 293 LTNRSSTVVAGGHSSMSF-PVLSGVPQGSHLGPLLFNAFIND-IGSCFRSTKFYMFADDL 466
L++R+ +V H + P+ SGVP+GS GP LF FIN + S S FADDL
Sbjct: 33 LSSRTFSVKVNNHIDPNIHPISSGVPKGSVSGPFLFLIFINSLLLSVPPSISCSAFADDL 92
Query: 467 KFFRKVNSSLDSELLQRDLDSLFGWCSANGMSLNISKCYVI 589
K + S L+Q +D + W N + L + K ++
Sbjct: 93 KVY-----SHSPPLIQTTIDLITTWSENNKLPLAVHKAALL 128
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +2
Query: 329 HSSMSFPVLSGVPQGSHLGPLLFNAFINDIGSCFRSTKFYMFADDLKFF-RKVNSSLDSE 505
H S +L GVPQGS + P LF ++ D+ + + T +ADD+ R +E
Sbjct: 522 HWSKWHTLLGGVPQGSVISPNLFTFYLKDMPT-QQDTMLISYADDMSIIARDKKIEKAAE 580
Query: 506 LLQRDLDSLFGWCSANGMSLNISKCYVIRFT 598
+Q +D + + GMS++ K V F+
Sbjct: 581 KVQLHIDEIAKYLKERGMSISAEKSTVTVFS 611
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -2
Query: 709 ELQLTIKWSHPRSLIESTSDSGAPLI*YVRENERLFSSKTNYIAFTDI--QTHAIRTAPA 536
E +T++W+ P TSD GAP+ YV E + S++ AF +I H +
Sbjct: 4516 EEAITLQWTRP------TSDGGAPIQGYVIEKREVGSTEWTKAAFGNILDTKHRVTGLTP 4569
Query: 535 KQTVQ 521
K+T +
Sbjct: 4570 KKTYE 4574
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -2
Query: 709 ELQLTIKWSHPRSLIESTSDSGAPLI*YVRENERLFSSKTNYIAFTDI--QTHAIRTAPA 536
E +T++W+ P TSD GAP+ YV E + S++ AF +I H +
Sbjct: 5045 EEAITLQWTRP------TSDGGAPIQGYVIEKREVGSTEWTKAAFGNILDTKHRVTGLTP 5098
Query: 535 KQTVQ 521
K+T +
Sbjct: 5099 KKTYE 5103
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -2
Query: 709 ELQLTIKWSHPRSLIESTSDSGAPLI*YVRENERLFSSKTNYIAFTDI--QTHAIRTAPA 536
E +T++W+ P TSD GAP+ YV E + S++ AF +I H +
Sbjct: 4726 EEAITLQWTRP------TSDGGAPIQGYVIEKREVGSTEWTKAAFGNILDTKHRVTGLTP 4779
Query: 535 KQTVQ 521
K+T +
Sbjct: 4780 KKTYE 4784
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -2
Query: 709 ELQLTIKWSHPRSLIESTSDSGAPLI*YVRENERLFSSKTNYIAFTDI--QTHAIRTAPA 536
E +T++W+ P TSD GAP+ YV E + S++ AF +I H +
Sbjct: 4516 EEAITLQWTRP------TSDGGAPIQGYVIEKREVGSTEWTKAAFGNILDTKHRVTGLTP 4569
Query: 535 KQTVQ 521
K+T +
Sbjct: 4570 KKTYE 4574
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -2
Query: 709 ELQLTIKWSHPRSLIESTSDSGAPLI*YVRENERLFSSKTNYIAFTDI--QTHAIRTAPA 536
E +T++W+ P TSD GAP+ YV E + S++ AF +I H +
Sbjct: 5045 EEAITLQWTRP------TSDGGAPIQGYVIEKREVGSTEWTKAAFGNILDTKHRVTGLTP 5098
Query: 535 KQTVQ 521
K+T +
Sbjct: 5099 KKTYE 5103
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -2
Query: 709 ELQLTIKWSHPRSLIESTSDSGAPLI*YVRENERLFSSKTNYIAFTDI--QTHAIRTAPA 536
E +T++W+ P TSD GAP+ YV E + S++ AF +I H +
Sbjct: 4726 EEAITLQWTRP------TSDGGAPIQGYVIEKREVGSTEWTKAAFGNILDTKHRVTGLTP 4779
Query: 535 KQTVQ 521
K+T +
Sbjct: 4780 KKTYE 4784
>Z70212-6|CAA94166.1| 336|Caenorhabditis elegans Hypothetical
protein R04D3.8 protein.
Length = 336
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 PSQFCLGFPKALIWVLYFLMHSSTT-LARVFVAQSSICS 455
P FC IW+L+ + HS+ + R +A +S+C+
Sbjct: 16 PVFFCTSVILQTIWLLFIIFHSAKMGIFRFIIAHTSVCN 54
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -2
Query: 709 ELQLTIKWSHPRSLIESTSDSGAPLI*YVRENERLFSSKTNYIAFTDI--QTHAIRTAPA 536
E +T++W+ P TSD GAP+ YV E + S++ AF +I H +
Sbjct: 3935 EEAITLQWTRP------TSDGGAPIQGYVIEKREVGSTEWTKAAFGNILDTKHRVTGLTP 3988
Query: 535 KQTVQ 521
K+T +
Sbjct: 3989 KKTYE 3993
>Z74043-4|CAA98541.1| 733|Caenorhabditis elegans Hypothetical
protein T19B10.8 protein.
Length = 733
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 633 INGAPLSEVDSIRDLGCDHL-IVSCN 707
+ PL +D + DLG DHL I+ CN
Sbjct: 281 VTNRPLWAIDGVSDLGADHLAILWCN 306
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = +2
Query: 362 VPQGSHLGPLLFNAFINDIGSCFRSTKFYMFADDLKFFRKVNSSLDSELLQRDLDSLFGW 541
+P G + P LF + +I +++ DDL +S D E +D+
Sbjct: 1150 LPFGLVISPALFQGTMEEIIGDLLGVCAFVYVDDLLI-----ASKDMEQHLQDVKEALTR 1204
Query: 542 CSANGMSLNISKCYVIR 592
+GM L SKC++ +
Sbjct: 1205 IRKSGMKLRASKCHIAK 1221
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = +2
Query: 362 VPQGSHLGPLLFNAFINDIGSCFRSTKFYMFADDLKFFRKVNSSLDSELLQRDLDSLFGW 541
+P G + P LF + +I +++ DDL +S D E +D+
Sbjct: 1053 LPFGLVISPALFQGTMEEIIGDLLGVCAFVYVDDLLI-----ASKDMEQHLQDVKEALTR 1107
Query: 542 CSANGMSLNISKCYVIR 592
+GM L SKC++ +
Sbjct: 1108 IRKSGMKLRASKCHIAK 1124
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = +2
Query: 362 VPQGSHLGPLLFNAFINDIGSCFRSTKFYMFADDLKFFRKVNSSLDSELLQRDLDSLFGW 541
+P G + P LF + +I +++ DDL +S D E +D+
Sbjct: 1064 LPFGLVISPALFQGTMEEIIGDLLGVCAFVYVDDLLI-----ASKDMEQHLQDVKEALTR 1118
Query: 542 CSANGMSLNISKCYVIR 592
+GM L SKC++ +
Sbjct: 1119 IRKSGMKLRASKCHIAK 1135
>U67954-8|AAB52608.2| 782|Caenorhabditis elegans Sulfate permease
family protein 3 protein.
Length = 782
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 410 NDIGSCFRSTKFYMFADDLKFFRKVNSSL 496
+D+ FR+T FY D+ K F KV ++
Sbjct: 669 SDLKKLFRATDFYEVVDESKVFNKVGDAV 697
>AY954524-1|AAX34432.2| 762|Caenorhabditis elegans anion
transporter SULP-3b protein.
Length = 762
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 410 NDIGSCFRSTKFYMFADDLKFFRKVNSSL 496
+D+ FR+T FY D+ K F KV ++
Sbjct: 649 SDLKKLFRATDFYEVVDESKVFNKVGDAV 677
>AY887909-1|AAX34421.1| 782|Caenorhabditis elegans anion
transporter SULP-3a protein.
Length = 782
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 410 NDIGSCFRSTKFYMFADDLKFFRKVNSSL 496
+D+ FR+T FY D+ K F KV ++
Sbjct: 669 SDLKKLFRATDFYEVVDESKVFNKVGDAV 697
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,697,070
Number of Sequences: 27780
Number of extensions: 353325
Number of successful extensions: 876
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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