Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1122
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25540.1 68416.m03175 longevity-assurance (LAG1) family prote...    30   1.3  
At4g18300.1 68417.m02715 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    28   5.3  
At4g14920.1 68417.m02292 PHD finger transcription factor, putative     28   5.3  
At2g18240.2 68415.m02126 RER1 protein, putative similar to SP|O4...    28   7.0  
At2g18240.1 68415.m02125 RER1 protein, putative similar to SP|O4...    28   7.0  
At5g22900.1 68418.m02678 cation/hydrogen exchanger, putative (CH...    27   9.3  

>At3g25540.1 68416.m03175 longevity-assurance (LAG1) family protein
           similar to Alternaria stem canker resistance protein
           (ASC1) [Lycopersicon esculentum] GI:7688742; contains
           Pfam profile PF03798: Longevity-assurance protein
           (LAG1); supporting cDNA
           gi|7658238|gb|AF198179.1|AF198179
          Length = 310

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -3

Query: 633 YDTFGKMSVFFLVKRIT*HLLIFRLMPFALHQPNKLSKSLCNNSESRDE 487
           Y  F  +  F LV  I   +LI+R++   +    KLS+ + ++SES DE
Sbjct: 259 YYMFNTLLYFLLVLHIFWWVLIYRMLVKQVQDRGKLSEDVRSDSESDDE 307


>At4g18300.1 68417.m02715 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein similar to SP|Q64350
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Rattus norvegicus};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 709

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 292 FNEQIVHGCCGGSLVDVLPSFVWGSPRLSFG 384
           +N  I +GCC GS V +  S++W +  +  G
Sbjct: 353 YNSVIGNGCCIGSNVVIQGSYIWNNVTIEDG 383


>At4g14920.1 68417.m02292 PHD finger transcription factor, putative
          Length = 1055

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 540 QPNKLSKSLCNNSESRDEFTFLKNFKSSANI 448
           + NK S+ + ++SES D FT  +N +   N+
Sbjct: 47  ESNKRSRMITSDSESSDRFTIPRNMRQYRNV 77


>At2g18240.2 68415.m02126 RER1 protein, putative similar to
           SP|O48671 RER1B protein (AtRER1B) {Arabidopsis
           thaliana}, SP|O48670 RER1A protein (AtRER1A)
           {Arabidopsis thaliana}; contains Pfam profile PF03248:
           Rer1 family
          Length = 220

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 597 VKRIT*HLLIFRLMPFALHQPNKLSKSLCNN 505
           +KR+  H+  +R  PF + +P KL K L N+
Sbjct: 161 MKRLIVHMFKYRYFPFDVRKPVKLLKFLVNS 191


>At2g18240.1 68415.m02125 RER1 protein, putative similar to
           SP|O48671 RER1B protein (AtRER1B) {Arabidopsis
           thaliana}, SP|O48670 RER1A protein (AtRER1A)
           {Arabidopsis thaliana}; contains Pfam profile PF03248:
           Rer1 family
          Length = 221

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 597 VKRIT*HLLIFRLMPFALHQPNKLSKSLCNN 505
           +KR+  H+  +R  PF + +P KL K L N+
Sbjct: 161 MKRLIVHMFKYRYFPFDVRKPVKLLKFLVNS 191


>At5g22900.1 68418.m02678 cation/hydrogen exchanger, putative (CHX3)
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 822

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 518 DLDSLFGWCSANGMSLNISKCYVIRF 595
           D+ +LFGW   NG+ L +   +V++F
Sbjct: 375 DISALFGWEGLNGIILIMVTSFVVKF 400


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,458,110
Number of Sequences: 28952
Number of extensions: 315493
Number of successful extensions: 707
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)