Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1121
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    30   0.19 
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    30   0.25 
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    29   0.44 
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    27   1.8  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.3  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.1  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   4.1  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    25   5.4  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   5.4  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   7.1  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   9.4  

>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 219 NLFSLVFLFLIALSV-YLFIYLFCDISFIPFIILFA 323
           N+    F+  IA +V YL+++L+C   F PF++LF+
Sbjct: 487 NVLKFFFIIPIAKNVCYLWVFLYCP--FTPFLVLFS 520


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
 Frame = +3

Query: 96  ILVFLLKLLYGIRICVFYF*KFCNXXXXXXXXXXXXXXXPANLFS-LVFLFLIALSVYLF 272
           +L+F+   L+ I +  F F  F                   N F+ L+F  L+ L+ Y F
Sbjct: 670 VLLFISTALFSIIMIYFVFCVFYISLIPLHNSDNSEIVLGNNYFTTLIFSSLLILACYAF 729

Query: 273 IYLFCDISFIPFIILFALFSDIYRIASYIIYLRIFA-CHI 389
           + L C     PF I   +   I  + + I   +I+A CH+
Sbjct: 730 VSLIC---MDPFFIFTCIVQYILLMPTRIYTEQIYALCHL 766


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 294 SFIPFIILFALFSDIYRIASYIIYLRIFACHILLRAYFI 410
           SFI F I +   S    +A YII++ I AC +LL   FI
Sbjct: 168 SFIAFGINYHSTSTGVPMAVYIIFIIIMACAVLLAILFI 206


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 240 LFLIALSVYLFIYLFCDISFI---PFIILFALFSDIYRIASYIIYLRIF 377
           +F+  +  +L+  LF ++ +I   P  ++FA+    Y I    +++R+F
Sbjct: 101 MFVTPIFSFLYSLLFKNLDYIQPGPTFLIFAILYQYYYIVPSTVFVRLF 149


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 124 YKSFRRNTNIV*REHTKTERTFFGNNNNIALANPYK 17
           YK++RR T+    ++ K+ R    N+++I L+NP K
Sbjct: 41  YKTYRRITDCPEIKNKKSRRKNQRNSSSIGLSNPNK 76


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -1

Query: 76  KTERTFFGNNNNIALANPY-KGC 11
           +T R FF NN  + L +PY +GC
Sbjct: 586 RTYRVFFLNNGTLPLNHPYVRGC 608


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 137 NTDTVQEFQEKY*YSIKRTYKNRTNFFWEQQQHRASE 27
           +T TV++ +     SIK    N  NF  E+ ++ ASE
Sbjct: 8   STSTVKDNEHSLDLSIKSIPSNEKNFSTEKSENEASE 44


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 240 LFLIALSVYLFIYLFCDISFIPFIILFALF--SDIYRIASYIIY 365
           LF  ALS++  + L  D+S +   +L  L+  S IY  +S+  +
Sbjct: 323 LFSAALSIFPLVLLQSDVSAVQSSLLIGLYLQSTIYEKSSFAYF 366


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
 Frame = +3

Query: 249 IALSVYLFIYLFCDISFIPFIILFAL-FSDIYR-IASYI--IYLRIFACHIL 392
           I  S++L I+L     FIP+ ILF++ +S +++ + +Y+  I++  F C  L
Sbjct: 202 IPQSLFLMIFLTLWNCFIPYSILFSMNWSAMFQVVGAYLSQIWIITFICWAL 253


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 53  PKKSSFCFCMFSLYYISISPETLVRY 130
           PK+ ++ F    + Y+S +P+T V Y
Sbjct: 248 PKEGTYTFSNMHIRYVSANPKTPVMY 273


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 24   GFASAMLLLFPKKVRSVFVCSLYTILVFLLKLLYGIRI 137
            G ++  ++LF   + S  +C+L T+L F  K  Y +R+
Sbjct: 1053 GSSTVSIILFSLFLVSPLICALATMLAF-QKFFYQVRL 1089


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,522,593
Number of Sequences: 5004
Number of extensions: 23291
Number of successful extensions: 67
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)