Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1121
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0259 - 42353992-42354111,42354255-42354385,42355484-423555...    30   1.0  
03_04_0058 - 16915281-16915313,16915424-16915535,16915585-169169...    28   4.1  
10_08_0391 + 17486109-17486210,17487032-17487129,17487331-174873...    27   7.2  
03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012     27   7.2  

>01_07_0259 -
           42353992-42354111,42354255-42354385,42355484-42355571,
           42356439-42357282,42357354-42357934,42358962-42359159
          Length = 653

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 128 TVQEFQEKY*YSIKRTYKNRTNFFWEQQQHRASEPLQRVYNK 3
           T +E  +KY    +R  KN + F+ + + HRA E L+ VY K
Sbjct: 608 TWEEIVQKYDTMFERNAKNGS-FYLQSKVHRAKECLEAVYQK 648


>03_04_0058 -
           16915281-16915313,16915424-16915535,16915585-16916990,
           16919112-16919282
          Length = 573

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 82  HTKTERTFFGNNNNIALANPYKGCTI 5
           H  T+R  FG  +   L N +KGCT+
Sbjct: 268 HVVTDRVHFGAMSTWFLINDFKGCTV 293


>10_08_0391 +
           17486109-17486210,17487032-17487129,17487331-17487361,
           17487655-17487707,17489254-17489402,17489828-17489898,
           17489988-17490131,17490249-17490309,17492180-17492265,
           17492839-17492926,17494012-17494142,17494266-17494394
          Length = 380

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 128 TVQEFQEKY*YSIKRTYKNRTNFFWEQQQHRASEPLQRVYNK 3
           T +E  ++Y    +R  K+ + F+ + + HRA E L+ VY K
Sbjct: 332 TWEEIAQRYDNLFERNAKSGS-FYLQSKVHRAKECLENVYQK 372


>03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012
          Length = 890

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -1

Query: 337 ISENKANKIINGINDISQNK*INK*TDNAIKNKKTKLNKLAGLRS 203
           ISE   NK+   +N++  NK IN+ +DN   +   K+ K + L S
Sbjct: 361 ISEELVNKLALKLNNLKVNKNINEISDNEKYDMVNKIFKPSTLTS 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,156,241
Number of Sequences: 37544
Number of extensions: 102349
Number of successful extensions: 257
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)