Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1121
(535 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28024| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.78
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94) 30 1.4
SB_59161| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8) 29 2.4
SB_54381| Best HMM Match : Trigger_C (HMM E-Value=0.55) 29 3.2
SB_21205| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.75) 27 9.6
SB_58944| Best HMM Match : fn3 (HMM E-Value=0.88) 27 9.6
SB_50618| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00017) 27 9.6
SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_45324| Best HMM Match : MbeB_N (HMM E-Value=1.7) 27 9.6
SB_35523| Best HMM Match : RVT_1 (HMM E-Value=0) 27 9.6
SB_20293| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_28024| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 968
Score = 30.7 bits (66), Expect = 0.78
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 125 VQEFQEKY*YSIKRTYKNRTNFFWEQQQHRASEP 24
++E +E + S++R YKN T FW +AS P
Sbjct: 450 LRESRENFFQSLERDYKNNTKRFWGLDASKASGP 483
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +3
Query: 231 LVFLFLIALSVYLFIYLFCDISFIPFIILFALFSDIYRIASYIIYLRIFACHIL 392
L + + ALSV L C F+P++ L A+F ++ ++ + YL + A H L
Sbjct: 1746 LCAICIFALSVSLHYLYLCVFVFLPYLCLCAIF--VFALSLSLRYLCLRAMHYL 1797
>SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)
Length = 310
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 228 SLVFLFLIALSVYLFIYLFCDISFIPFIILFALFSDIYRIASYIIYLRI-FACHILLRAY 404
SL L I + IY FC + F+ I+ A IY S +++ I AC ++ AY
Sbjct: 206 SLFVLITIIHACLFMIYAFCSL-FVLITIVHARLFMIYAYCSLFVFITIVHACLFMIYAY 264
>SB_59161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 234 VFLFLIALSVYLF-IYLFCDISFIPFIILFALFSDIYRIASYIIYLRIF-ACHILLRAY 404
+F+F+ + LF IY +C + F+ I+ A IY S +++ I AC ++ AY
Sbjct: 208 LFVFITIVHARLFMIYAYCSL-FVFITIVHARLFMIYAYCSLFVFITIVHACLFMIYAY 265
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 234 VFLFLIALSVYLF-IYLFCDISFIPFIILFALFSDIYRIASYIIYLRIF-ACHILLRAY 404
+F+F+ + LF IY +C + F+ I+ A IY S + + I AC ++ AY
Sbjct: 108 LFVFITIVHACLFMIYAYCSL-FVLITIVHACLFMIYAYCSLFVLITIVHACLFMIYAY 165
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 228 SLVFLFLIALSVYLFIYLFCDISFIPFIILFALFSDIYRIASYIIYLRIF-ACHILLRAY 404
SL L I + IY +C + F+ I+ A IY S + + I AC ++ AY
Sbjct: 7 SLFVLITIVHACLFMIYAYCSL-FVLITIVHACLFMIYAYCSLFVLITIVHACLFMIYAY 65
>SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)
Length = 347
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 228 SLVFLFLIALSVYLFIYLFCDISFIPFIILFALFSDIYRIASYIIYLRIF-ACHILLRAY 404
SL L I + IY +C + F+ I+ A IY S +++ I AC ++ AY
Sbjct: 166 SLFVLITIVHARLFMIYAYCSL-FVLITIVHARLFMIYAYCSLFVFITIVHACLFMINAY 224
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 228 SLVFLFLIALSVYLFIYLFCDISFIPFIILFALFSDIYRIASYIIYLRIF-ACHILLRAY 404
SL L I + IY +C + F+ I+ A IY S + + I AC ++ AY
Sbjct: 106 SLFVLITIVHACLFMIYAYCSL-FVLITIVHACLFMIYAYCSLFVLITIVHACLFMIYAY 164
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 228 SLVFLFLIALSVYLFIYLFCDISFIPFIILFALFSDIYRIASYIIYLRIF-ACHILLRAY 404
SL L I + IY +C + F+ I+ A IY S + + I AC ++ AY
Sbjct: 86 SLFVLITIVHARLFMIYAYCSL-FVLITIVHACLFMIYAYCSLFVLITIVHACLFMIYAY 144
>SB_54381| Best HMM Match : Trigger_C (HMM E-Value=0.55)
Length = 607
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -1
Query: 394 NKIWHANIRK*IMYEAIR*ISENKANKIINGINDISQNK*INK*TDNAIKNKKT 233
NK+ + K + Y+ ++ NK+ N + + NK NK T+N + NKKT
Sbjct: 443 NKVTNKVANK-VTYKVANKVTNKVTNKVANKVTNKVTNKVANKLTNN-VTNKKT 494
>SB_21205| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.75)
Length = 505
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 125 VQEFQEKY*YSIKRTYKNRTNFFW 54
++E +E + S++R YKN T FW
Sbjct: 306 LRESRENFFQSLERDYKNNTKRFW 329
>SB_58944| Best HMM Match : fn3 (HMM E-Value=0.88)
Length = 697
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 125 VQEFQEKY*YSIKRTYKNRTNFFW 54
++E +E + S++R YKN T FW
Sbjct: 158 LRESRENFFQSLERDYKNNTKRFW 181
>SB_50618| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00017)
Length = 748
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 125 VQEFQEKY*YSIKRTYKNRTNFFW 54
++E +E + S++R YKN T FW
Sbjct: 514 LRESRENFFQSLERDYKNNTKRFW 537
>SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 125 VQEFQEKY*YSIKRTYKNRTNFFW 54
++E +E + S++R YKN T FW
Sbjct: 1275 LRESRENFFQSLERDYKNNTKRFW 1298
>SB_45324| Best HMM Match : MbeB_N (HMM E-Value=1.7)
Length = 235
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 125 VQEFQEKY*YSIKRTYKNRTNFFW 54
++E +E + S++R YKN T FW
Sbjct: 197 LRESRENFFQSLERDYKNNTKRFW 220
>SB_35523| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1410
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 125 VQEFQEKY*YSIKRTYKNRTNFFW 54
++E +E + S++R YKN T FW
Sbjct: 313 LRESRENFFQSLERDYKNNTKRFW 336
>SB_20293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1821
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 125 VQEFQEKY*YSIKRTYKNRTNFFW 54
++E +E + S++R YKN T FW
Sbjct: 261 LRESRENFFQSLERDYKNNTKRFW 284
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,533,235
Number of Sequences: 59808
Number of extensions: 148130
Number of successful extensions: 714
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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