Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1121
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81043-5|CAB02802.2|  278|Caenorhabditis elegans Hypothetical pr...    34   0.056
Z81127-4|CAB03389.1|  344|Caenorhabditis elegans Hypothetical pr...    33   0.17 
Z81056-5|CAB02905.2|  307|Caenorhabditis elegans Hypothetical pr...    31   0.39 
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p...    29   1.6  
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z92973-1|CAB07493.2|  323|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z82086-3|CAB04997.1|  325|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z81560-3|CAB04548.2|  328|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z81122-12|CAB03359.1|  235|Caenorhabditis elegans Hypothetical p...    27   8.5  
Z70783-3|CAA94853.4|  755|Caenorhabditis elegans Hypothetical pr...    27   8.5  
U66405-1|AAB48388.1|  235|Caenorhabditis elegans caveolin-1 prot...    27   8.5  

>Z81043-5|CAB02802.2|  278|Caenorhabditis elegans Hypothetical
           protein C29F3.6 protein.
          Length = 278

 Score = 34.3 bits (75), Expect = 0.056
 Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
 Frame = +3

Query: 93  TILVFLLKLLYGIRI-CVFYF*KFCNXXXXXXXXXXXXXXXPANLFSLVFLFLIALSVYL 269
           TILVFL  L   I + C+F   K                   A L+S ++LF      +L
Sbjct: 13  TILVFLCSLGVLINLFCIFSICKLSAFKNSFGYLSANQAFADA-LYSSLYLFYFCFMDFL 71

Query: 270 FIYLFCDISFIPFIILFALFSDIYRIASYIIYLRIFA---CHILLRAYF 407
            ++LF +  FI F  L A+F D+  +  +II L  F    C I  +  F
Sbjct: 72  DVFLFQENVFI-FGFLVAVFHDVSVLTHFIISLNRFISVWCPIFYKTMF 119


>Z81127-4|CAB03389.1|  344|Caenorhabditis elegans Hypothetical
           protein T22G5.4 protein.
          Length = 344

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 273 IYLFCDI-SFIPFIILFALFSDIYRIASYIIYLRIFACHILLRAYFI 410
           IY+FC + S I F +LF +F +   I  Y+ YL I       +AYF+
Sbjct: 222 IYIFCWMTSSICFRVLFYMFENETNIVPYMPYLAIITMPNFCQAYFV 268


>Z81056-5|CAB02905.2|  307|Caenorhabditis elegans Hypothetical
           protein F09F3.7 protein.
          Length = 307

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 225 FSLVFLFLIALSVYLFIYL-FCDISFIPFIILFALFSDIYRIASYIIYLRIFACHIL 392
           F    L  ++++ ++ IY  F  IS  PF   F +F  I   +S +   +IF+C+I+
Sbjct: 92  FGPFILICMSINRFIAIYFPFSTISKKPFFTNFGIFISILLASSPVFVPKIFSCYII 148


>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
           protein F36H1.2c protein.
          Length = 1427

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 222 LFSLVFLFLIALSVYLFIYLFCDISFIPFIILFALFSDIYRIASY 356
           +FSL F  LIA+S  +  YL   IS+  F+++F +F  +  +  Y
Sbjct: 500 MFSLTFTMLIAISNSVTAYL---ISWSVFLLIFIIFCSLIVVVYY 541


>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical
           protein F36H1.2b protein.
          Length = 1379

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 222 LFSLVFLFLIALSVYLFIYLFCDISFIPFIILFALFSDIYRIASY 356
           +FSL F  LIA+S  +  YL   IS+  F+++F +F  +  +  Y
Sbjct: 500 MFSLTFTMLIAISNSVTAYL---ISWSVFLLIFIIFCSLIVVVYY 541


>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical
           protein F36H1.2a protein.
          Length = 1398

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 222 LFSLVFLFLIALSVYLFIYLFCDISFIPFIILFALFSDIYRIASY 356
           +FSL F  LIA+S  +  YL   IS+  F+++F +F  +  +  Y
Sbjct: 500 MFSLTFTMLIAISNSVTAYL---ISWSVFLLIFIIFCSLIVVVYY 541


>Z92973-1|CAB07493.2|  323|Caenorhabditis elegans Hypothetical
           protein Y6G8.1 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +3

Query: 237 FLFLIALSVYLFIYLFCD----ISFIPFIILFALFSDIYRI-ASYIIYLRIFACHILL 395
           F FL+  S +LF+ L  D    + F   +I F +   I  +   Y++Y+ + A H+LL
Sbjct: 64  FCFLVKTSYFLFVILLIDSTLLMKFPQAVIQFDVSLQILMLFLFYVLYICMQAFHLLL 121


>Z82086-3|CAB04997.1|  325|Caenorhabditis elegans Hypothetical
           protein ZK228.6 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 243 FLIALSVYLFIYLFCDISFIPFIILFALFSDIYRIASYIIYLRIFACHILL 395
           F +AL + +FI  F  + F    I+FA++S  Y  A+  +     +CH +L
Sbjct: 237 FFVALCIQVFIP-FALLCFPVIYIIFAIYSGYYNQAATNVAQIAVSCHGIL 286


>Z81560-3|CAB04548.2|  328|Caenorhabditis elegans Hypothetical
           protein K02E2.3 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 243 FLIALSVYLFIYLFCDISFIPFIILFALFSDIYRIASYIIYLRIFACHILL 395
           F  A+  ++ I L   +S   F I FA+  D Y  A+  I L   +CH +L
Sbjct: 237 FFFAICFHVIIPLIV-LSIPSFYIFFAMRFDYYNQAATNIALSTISCHGIL 286


>Z81122-12|CAB03359.1|  235|Caenorhabditis elegans Hypothetical
           protein T13F2.8 protein.
          Length = 235

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 258 SVYLFIYLFCDISFIPFIILFALF 329
           +V LFIY    +  +PF I+FA+F
Sbjct: 144 AVRLFIYRLVSLLALPFTIIFAIF 167


>Z70783-3|CAA94853.4|  755|Caenorhabditis elegans Hypothetical
           protein ZK856.5 protein.
          Length = 755

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 246 LIALSVYLFIYLFCDISFIPFIILFALFSDIY 341
           L +L   ++  LF  +SF  +++ F LFSDI+
Sbjct: 446 LFSLFAIIYTELFLFLSFSKWVLHFQLFSDIH 477


>U66405-1|AAB48388.1|  235|Caenorhabditis elegans caveolin-1
           protein.
          Length = 235

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 258 SVYLFIYLFCDISFIPFIILFALF 329
           +V LFIY    +  +PF I+FA+F
Sbjct: 144 AVRLFIYRLVSLLALPFTIIFAIF 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,149,585
Number of Sequences: 27780
Number of extensions: 124672
Number of successful extensions: 495
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)