Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1119
         (553 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q92IN9 Cluster: NADH dehydrogenase I chain L [EC:1.6.5....    34   2.5  
UniRef50_Q6E7C0 Cluster: Calcium transporter 2; n=1; Oikopleura ...    33   3.3  
UniRef50_Q54W76 Cluster: Putative uncharacterized protein; n=1; ...    33   4.4  
UniRef50_Q8IEN0 Cluster: Putative uncharacterized protein MAL13P...    33   5.8  
UniRef50_Q5CWI2 Cluster: Putative uncharacterized protein; n=2; ...    33   5.8  
UniRef50_A1DGU3 Cluster: Adhesin, putative; n=5; Trichocomaceae|...    33   5.8  
UniRef50_Q54GV3 Cluster: Putative uncharacterized protein; n=1; ...    32   7.7  

>UniRef50_Q92IN9 Cluster: NADH dehydrogenase I chain L [EC:1.6.5.3];
           n=9; Rickettsia|Rep: NADH dehydrogenase I chain L
           [EC:1.6.5.3] - Rickettsia conorii
          Length = 487

 Score = 33.9 bits (74), Expect = 2.5
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +3

Query: 99  YLEHILFTHNTLLFL*KIISIYL--VK*LNRRKVDSLLIKYTMQYIEKVIYC**VFKYLP 272
           YL+ I    N L+F+  I+SI+   +K L+   +  +L   TM  +   +     F   P
Sbjct: 275 YLQMIFAEFNWLIFI-PIVSIFYSSIKALDTDNIKKILAYSTMNQLSLALLS--AFMLTP 331

Query: 273 CSLRALTVAIPMHSILTICGIYSLHSI 353
            +L A  + +  HS   IC  YS+ SI
Sbjct: 332 KALGAAILHLVSHSFTKICLFYSMGSI 358


>UniRef50_Q6E7C0 Cluster: Calcium transporter 2; n=1; Oikopleura
           dioica|Rep: Calcium transporter 2 - Oikopleura dioica
           (Tunicate)
          Length = 821

 Score = 33.5 bits (73), Expect = 3.3
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
 Frame = +1

Query: 7   IVNGR-LYVVS----LSEAPSLGTCFNRSEQTHCDYTLNIFYLHITPYCF 141
           I NGR ++V S    LS+ P+  TCF+R E   CD  ++I  +H + + F
Sbjct: 426 IFNGREIFVQSNDPALSQPPNSTTCFDRLEPEDCDLVMSINRVHYSLFAF 475


>UniRef50_Q54W76 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 821

 Score = 33.1 bits (72), Expect = 4.4
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -1

Query: 244 YITFSMYCIVYLINKESTFRRFNHFTK*IDIIFYRNNKVLCVNKICSRYNRNVFALND 71
           Y+ F ++  +  INK   + RFN++   I+ I    N+VL  NK+    N     +N+
Sbjct: 14  YLRFLIFKNIKKINKNLFYERFNYYELSIEFIIKIKNQVLLSNKVNDFLNSKNLLINN 71


>UniRef50_Q8IEN0 Cluster: Putative uncharacterized protein
           MAL13P1.40; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein MAL13P1.40 - Plasmodium
           falciparum (isolate 3D7)
          Length = 359

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
 Frame = -1

Query: 358 HTIECKL*MPQIVNIECIGIATVKALKLQGKYLKTH------*QYITFSMYCIVYLINKE 197
           + I+C +  P I  I    I   ++L ++G +L TH       +Y    +Y +VY+ +KE
Sbjct: 225 YLIQCDVLYPYIDEIIYENIKNKQSLIIEGVHLSTHVMKKLIKKYPNKIIYFLVYINDKE 284

Query: 196 STFRRFNHFTK*IDIIFYRNNKVLCVNKICSRYN 95
           ++ +RF   T+  +     NNK   VNK    +N
Sbjct: 285 TSIKRF--ATRTNNNKLPNNNKNEKVNKYIQNFN 316


>UniRef50_Q5CWI2 Cluster: Putative uncharacterized protein; n=2;
           Cryptosporidium parvum|Rep: Putative uncharacterized
           protein - Cryptosporidium parvum Iowa II
          Length = 127

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 498 VLFLTFVFFFNYCYLSGFSNMKRNTTQYNTIKNSVSSTGHN*CLLGDI 355
           V  L F+F F+ CYL   S M  +  +Y ++  S +   HN C+  +I
Sbjct: 48  VFTLLFIFKFDVCYLEN-SYMNSSNLKYYSLSLSSTKYSHNYCIAAEI 94


>UniRef50_A1DGU3 Cluster: Adhesin, putative; n=5;
           Trichocomaceae|Rep: Adhesin, putative - Neosartorya
           fischeri (strain ATCC 1020 / DSM 3700 / NRRL
           181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
           3700 / NRRL 181))
          Length = 182

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +1

Query: 28  VVSLSEAPSLGTCFNRSEQTHCDYTLNIFYLHITPYCFCRK*Y 156
           V S S  P  GTC   S Q HCD T +        +C CR  Y
Sbjct: 82  VFSSSIPPKCGTCNPLSGQNHCDLTTSCINTGTRFHCACRAGY 124


>UniRef50_Q54GV3 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 67

 Score = 32.3 bits (70), Expect = 7.7
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 525 RYFQRS*DRVLFLTFVFFFNYCYLSGFSNM-KRNTTQYNTIKNSV 394
           +Y++     ++F  F FFF Y +  GF N+ K+    Y T+KNS+
Sbjct: 13  KYYKLKISFIIFFFFYFFFFY-FFYGFWNLNKKKKFFYKTVKNSI 56


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 464,591,746
Number of Sequences: 1657284
Number of extensions: 8439129
Number of successful extensions: 17168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17161
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36238783989
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)