Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1119
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    25   5.6  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   5.6  
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    25   7.4  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   7.4  
SPAC22H12.01c |mug35|SPAC23G3.13c|sequence orphan|Schizosaccharo...    25   9.8  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   9.8  

>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 504 DRVLFLTFVFFFNYCYLSGFSNMKRNTTQYNTIKNSVS 391
           D V+ LT      +C + G S +  NTT   T KN+++
Sbjct: 28  DDVVALTLAACAGHCKILGVSTVHGNTTLEFTTKNALA 65


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 279 LRALTVAIPMHSILTICGIYSLHSI 353
           +R     +P  S  + CGIY+LH +
Sbjct: 542 IRGFHAKVPQQSNFSDCGIYALHFV 566


>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -3

Query: 461 AIYRVFQI*NVTLHNTIQLRIA*VRLVTTNVFSVTYN*MQTVNATN 324
           A+  +  I N T HN     I  ++L TT++FSV  N    VN T+
Sbjct: 24  ALLSILCIINQTQHNIAFQNIYFIQLNTTSIFSVA-NQTAVVNNTS 68


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = -2

Query: 504 DRVLFLTFVFFFNYC----YLSGFSNMKRNTTQYNTIKNSV 394
           DR +FL FV     C     LS F N   N    NT+ NSV
Sbjct: 418 DRNVFLCFVVGSKSCGKTALLSSFINNNTNRLTPNTVVNSV 458


>SPAC22H12.01c |mug35|SPAC23G3.13c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 115 KICSRYNRNVFALND*SMFLEMGLHSTKQHKD 20
           KICSR   N  ++++   F+ MGL S  QH +
Sbjct: 199 KICSR---NGMSVDEFLRFIRMGLESNFQHSN 227


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 444 SNMKRNTTQYNTIKNSVSSTGHN 376
           S  + N T+ N+ KNSV S G+N
Sbjct: 469 SKNRTNVTKPNSYKNSVLSIGNN 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,685
Number of Sequences: 5004
Number of extensions: 40045
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)