Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1119
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1034 + 23823194-23823307,23823399-23823620,23823984-238243...    29   3.3  
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935...    27   10.0 
04_02_0008 + 8473198-8475523,8475618-8475967                           27   10.0 

>08_02_1034 +
           23823194-23823307,23823399-23823620,23823984-23824309,
           23824648-23824777,23825145-23825441,23825550-23825815,
           23827835-23828333,23828902-23828993,23829571-23829735,
           23829817-23830204,23830275-23830393,23830494-23830524,
           23830675-23830880,23830970-23831014,23831120-23831201,
           23832210-23832398,23834499-23834602,23834669-23834759,
           23835097-23835225,23835425-23835556,23835779-23835949,
           23836143-23836171,23836214-23836301,23836313-23836391,
           23836666-23836844
          Length = 1390

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -2

Query: 534 KRTRYFQRS*DRVLFLTFVFFFNYCYLSGFSNMKRNTTQYNTIKNS--VSSTGHN*CLLG 361
           KR R  +R     L L +  F +YCY S    M+        + +   +    H+ CL G
Sbjct: 225 KRDRLVERVCVTPLQLQWGSFQSYCYRSLIDGMEHIAMVKGDVGDGQDILVRVHSECLTG 284

Query: 360 DIQLNANCKC 331
           DI  +A C C
Sbjct: 285 DIFGSARCDC 294


>04_04_1228 +
           31888350-31892228,31892568-31893298,31893511-31893586,
           31894089-31894164,31894571-31894656,31895414-31895482,
           31895579-31895588,31895711-31896207
          Length = 1807

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 220 CNTLKRLYIVNESLNTCPA 276
           CN LK L+I+    +TCP+
Sbjct: 897 CNNLKELFIIEHGGSTCPS 915


>04_02_0008 + 8473198-8475523,8475618-8475967
          Length = 891

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
 Frame = -1

Query: 235 FSMYCIVYLINKESTFRRFNHFTK*IDIIFY-----RNNKVLCVNKICSRYNRNVF 83
           FS+ CI++ + KEST ++ +++ + +  + Y       N    VNKI S +  +V+
Sbjct: 553 FSILCIMFTLRKESTTQQSSNYKETMKRVSYGDILKATNWFSPVNKISSSHTGSVY 608


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,579,949
Number of Sequences: 37544
Number of extensions: 196200
Number of successful extensions: 289
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)