Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1119
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45933| Best HMM Match : RVT_1 (HMM E-Value=3.2e-13)                 29   1.9  

>SB_45933| Best HMM Match : RVT_1 (HMM E-Value=3.2e-13)
          Length = 901

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -1

Query: 226 YCIVYLINKESTFRRFNHFTK*IDIIFYRNNKVLCVNKICSRY--NRNVFALND*SMFLE 53
           +CI Y+     + R   HF + +++  Y N+K LCV  I   Y    N+   ND S FL 
Sbjct: 750 HCIFYIQELLKSSRPSKHFGR-LEVKAYENDKRLCVVTIIKEYVERTNLLKGND-SRFL- 806

Query: 52  MGLHSTKQHKDV 17
             +   K HK +
Sbjct: 807 --ISFQKPHKPI 816


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,786,030
Number of Sequences: 59808
Number of extensions: 277128
Number of successful extensions: 523
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)