Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1119
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81537-8|CAB04380.1|  343|Caenorhabditis elegans Hypothetical pr...    31   0.42 
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    30   1.3  
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z81537-8|CAB04380.1|  343|Caenorhabditis elegans Hypothetical
           protein F41D3.9 protein.
          Length = 343

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = -2

Query: 501 RVLFLTFVFFFNYCYLSGFSNM---KRNTTQYNTIKNSVSSTGHN*CLLGDIQLNANCKC 331
           R LFL+FV  +++CY   F N+   K    +    K++++   +N C      LN+  K 
Sbjct: 5   RRLFLSFVVIWSFCYF--FINVPADKHPKQEVCVCKSAITGKSYNFCYRDPQNLNSIGKK 62

Query: 330 HKLSILNALE 301
              S+L+ LE
Sbjct: 63  FNCSLLSTLE 72


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 414 NTIKNSVSSTGHN*CLLGDIQLNANC 337
           NT  N+ SS G+N CL G   +N  C
Sbjct: 146 NTNSNTCSSNGNNGCLAGQTMVNGQC 171


>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical protein
            R03G5.3 protein.
          Length = 1311

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/63 (23%), Positives = 34/63 (53%)
 Frame = -3

Query: 545  IFIIKEHVTFNEAKIVCYF*RSFFFLIIAIYRVFQI*NVTLHNTIQLRIA*VRLVTTNVF 366
            IF+ +++  FN+   V Y  R    +  ++YR F + N+  +    L ++ +  V +NV+
Sbjct: 1094 IFLNRDNALFNQISNVMYANRLALLMSCSLYRPFYLTNLN-YEKYALLVSCMVFVVSNVW 1152

Query: 365  SVT 357
            +++
Sbjct: 1153 NLS 1155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,461,167
Number of Sequences: 27780
Number of extensions: 227546
Number of successful extensions: 381
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)