Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1119
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45480.1 68418.m05587 expressed protein contains Pfam domain,...    28   3.6  
At3g14730.1 68416.m01862 pentatricopeptide (PPR) repeat-containi...    28   3.6  
At5g46340.1 68418.m05704 O-acetyltransferase-related similar to ...    27   6.3  
At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR...    27   6.3  
At1g74860.1 68414.m08676 expressed protein                             27   8.3  

>At5g45480.1 68418.m05587 expressed protein contains Pfam domain,
           PF04578: Protein of unknown function, DUF594
          Length = 877

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 289 KALKLQGKYLKTH*QYITFSMYCIVYL 209
           K  +L  KY K + +YI FS +CI Y+
Sbjct: 551 KVSRLCKKYPKLNEEYIRFSFFCIFYI 577


>At3g14730.1 68416.m01862 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 653

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 489 LTFVFFFNYCYLSGFSNMKRN-TTQYNTIKNSVSSTGHN*CLL 364
           +TFV     C  SGF N  RN   Q  T+ N + ++ H  C++
Sbjct: 469 ITFVGLLQACSHSGFLNEGRNFLAQMETVYNILPTSDHYACVI 511


>At5g46340.1 68418.m05704 O-acetyltransferase-related similar to
           O-acetyltransferase [Homo sapiens] GI:17016934
          Length = 540

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 22/100 (22%), Positives = 43/100 (43%)
 Frame = -1

Query: 304 GIATVKALKLQGKYLKTH*QYITFSMYCIVYLINKESTFRRFNHFTK*IDIIFYRNNKVL 125
           G+A   ++K     ++T+   I F      +L+   +T R  + F   I I FY  ++  
Sbjct: 68  GLARSPSVKFHNSSIRTN--IIRFLSMEDSFLLEHRATLRAMSEFGA-ILIYFYICDRTE 124

Query: 124 CVNKICSRYNRNVFALND*SMFLEMGLHSTKQHKDVHSLS 5
            +      YNR++F      + +   + S ++H D   +S
Sbjct: 125 LLGDSTKNYNRDLFLFLYVLLIIVSAMTSLRKHNDKSPIS 164


>At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 897

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 504 DRVLFLTFVFFFNYCYLSGFSNMKRNT 424
           D+ LFL    +FNY Y+   ++M  NT
Sbjct: 430 DQALFLLIAVYFNYDYVDYVTSMLENT 456


>At1g74860.1 68414.m08676 expressed protein
          Length = 400

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 1   GSIVNGRLYVVSLSEAPSLGTCFNRSEQTHCDYTL 105
           GS+V   + V SL+   S+  C  +  +  C YTL
Sbjct: 160 GSVVANGIKVPSLTRINSINRCSYKDNKDQCHYTL 194


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,120,203
Number of Sequences: 28952
Number of extensions: 181311
Number of successful extensions: 305
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)