Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1115
         (342 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7E1Q2 Cluster: NADH dehydrogenase subunit 4; n=1; Ache...    31   6.7  
UniRef50_UPI0000F1DD15 Cluster: PREDICTED: hypothetical protein;...    30   8.8  
UniRef50_Q4CYP9 Cluster: Putative uncharacterized protein; n=2; ...    30   8.8  
UniRef50_O62450 Cluster: Putative uncharacterized protein srxa-1...    30   8.8  

>UniRef50_A7E1Q2 Cluster: NADH dehydrogenase subunit 4; n=1; Achelia
           bituberculata|Rep: NADH dehydrogenase subunit 4 -
           Achelia bituberculata
          Length = 455

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 222 YATFVLDRTVE*FLITF*LNTPHTSLHTYF*FSFIRMKML 341
           Y  F+L      + I F  NT H  LH+ + F+FI M+ L
Sbjct: 392 YLMFILSFFTSCYSIYFYYNTQHGKLHSLYSFNFINMREL 431


>UniRef50_UPI0000F1DD15 Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 568

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 83  SSRP-ASADRGQRHKRQPSRPAHCACE 6
           +SRP AS D G +H  +PS   HCA E
Sbjct: 426 ASRPNASTDLGDKHLLEPSEETHCAKE 452


>UniRef50_Q4CYP9 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 885

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -3

Query: 172 PGEARHQKKLKSACYVVQSLDYIMSSNTA-SRPALRQRTGDSDTSDNRRGRP 20
           P  A+ +  + S+  +   + Y  SS+++ SR +   R+GDSD+ ++ RG P
Sbjct: 768 PASAKKRPAVLSSKEIRTQVKYKASSSSSISRSSTSSRSGDSDSDESGRGDP 819


>UniRef50_O62450 Cluster: Putative uncharacterized protein srxa-15;
           n=2; Caenorhabditis|Rep: Putative uncharacterized
           protein srxa-15 - Caenorhabditis elegans
          Length = 324

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +2

Query: 161 SLPRRHATKLAVPTVTTILVLRHLRIRSDSRMIFDNILIKYSSHELTYLFL 313
           +L RR    +++ + + +  L  L  RS SR  FD  L+ +S+   ++LFL
Sbjct: 197 ALRRRRLNIVSISSTSNVHQLPPLATRSKSRQSFDRCLLLHSTITTSFLFL 247


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 358,130,636
Number of Sequences: 1657284
Number of extensions: 7064952
Number of successful extensions: 16771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16761
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 10275329640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)