Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1115
         (342 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   1.5  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   2.6  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   2.6  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    20   6.1  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    20   6.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    20   6.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    20   8.1  

>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve
          cord defective protein protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 94 NTASRPALRQRTGDSDTSDNRR 29
          ++AS PA+ +R  D D S++ +
Sbjct: 5  SSASNPAVSERDPDEDNSEDSK 26


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = -2

Query: 182 SRGAGGGSTPKKIKISMLCGPKFRLHYEF----EYRLSSRPASAD 60
           S GAG G+   +I+  +   P  R  YE+     Y+    P  AD
Sbjct: 98  SPGAGSGNLSPQIQTQVARPPPARSPYEWIKKTSYQSQPNPEPAD 142


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = -2

Query: 182 SRGAGGGSTPKKIKISMLCGPKFRLHYEF----EYRLSSRPASAD 60
           S GAG G+   +I+  +   P  R  YE+     Y+    P  AD
Sbjct: 98  SPGAGSGNLSPQIQTQVARPPPARSPYEWIKKTSYQSQPNPEPAD 142


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 20.2 bits (40), Expect = 6.1
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 206 LQSVPPVLSRGAGGGSTPKKIK 141
           L+S+ P++ RG+    TP+++K
Sbjct: 65  LKSLAPLVLRGSCPQCTPQEMK 86


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 20.2 bits (40), Expect = 6.1
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +1

Query: 163 PPPAPRDKTGGTDCNYNFSFTPP 231
           P   P  +   +DC+ + + TPP
Sbjct: 40  PENHPETELSDSDCDLDVTGTPP 62


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.2 bits (40), Expect = 6.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 70  RQRTGDSDTSD 38
           RQRT D DTS+
Sbjct: 160 RQRTKDRDTSE 170


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 115 LDYIMSSNTASRPA 74
           LD++ S N  +RPA
Sbjct: 704 LDFLKSGNRLARPA 717


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,944
Number of Sequences: 336
Number of extensions: 1737
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6664455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)