Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1115
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    28   0.46 
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    24   5.6  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    24   5.6  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    24   5.6  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    24   7.5  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    23   9.8  

>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 27.9 bits (59), Expect = 0.46
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 166 PPAPRDKTGGTDCNYNFSFTPPSY 237
           PP+P      ++CNY + +TP  Y
Sbjct: 428 PPSPSSGRSCSNCNYYYPYTPVGY 451


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 151  FGVEPPPAPRDKTGGTDCNYNFSFTPP 231
            F   PPP P + +G +  N N + T P
Sbjct: 1617 FSSSPPPQPGNSSGMSAMNTNTTSTTP 1643


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 166 PPAPRDKTGGTDCN 207
           PPAP+D++ GT+ N
Sbjct: 190 PPAPQDESQGTEIN 203


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 151  FGVEPPPAPRDKTGGTDCNYNFSFTPP 231
            F   PPP P + +G +  N N + T P
Sbjct: 1617 FSSSPPPQPGNSSGMSAMNTNTTSTTP 1643


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = -2

Query: 191 PVLSRGAGGGSTPKKIKISMLCGPKFRLHYEFEY 90
           P  S G+G  S  K   IS    PK   H  F Y
Sbjct: 130 PTSSYGSGSASPRKSTVISSPFDPKHVTHVGFNY 163


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 124 VQSLDYIMSSNTASRPALRQRTGDS 50
           V+ +  +++S +  +P+L QR GDS
Sbjct: 425 VEHIGCVVTSPSNEKPSLSQRLGDS 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,401,868
Number of Sequences: 5004
Number of extensions: 26234
Number of successful extensions: 53
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)