BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1115 (342 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 28 0.46 SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 24 5.6 SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 24 5.6 SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 24 5.6 SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 24 7.5 SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 23 9.8 >SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 461 Score = 27.9 bits (59), Expect = 0.46 Identities = 9/24 (37%), Positives = 14/24 (58%) Frame = +1 Query: 166 PPAPRDKTGGTDCNYNFSFTPPSY 237 PP+P ++CNY + +TP Y Sbjct: 428 PPSPSSGRSCSNCNYYYPYTPVGY 451 >SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pombe|chr 1||Partial|Manual Length = 1887 Score = 24.2 bits (50), Expect = 5.6 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = +1 Query: 151 FGVEPPPAPRDKTGGTDCNYNFSFTPP 231 F PPP P + +G + N N + T P Sbjct: 1617 FSSSPPPQPGNSSGMSAMNTNTTSTTP 1643 >SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosaccharomyces pombe|chr 2|||Manual Length = 424 Score = 24.2 bits (50), Expect = 5.6 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = +1 Query: 166 PPAPRDKTGGTDCN 207 PPAP+D++ GT+ N Sbjct: 190 PPAPQDESQGTEIN 203 >SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1919 Score = 24.2 bits (50), Expect = 5.6 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = +1 Query: 151 FGVEPPPAPRDKTGGTDCNYNFSFTPP 231 F PPP P + +G + N N + T P Sbjct: 1617 FSSSPPPQPGNSSGMSAMNTNTTSTTP 1643 >SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosaccharomyces pombe|chr 2|||Manual Length = 658 Score = 23.8 bits (49), Expect = 7.5 Identities = 13/34 (38%), Positives = 14/34 (41%) Frame = -2 Query: 191 PVLSRGAGGGSTPKKIKISMLCGPKFRLHYEFEY 90 P S G+G S K IS PK H F Y Sbjct: 130 PTSSYGSGSASPRKSTVISSPFDPKHVTHVGFNY 163 >SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor Sec74|Schizosaccharomyces pombe|chr 1|||Manual Length = 928 Score = 23.4 bits (48), Expect = 9.8 Identities = 9/25 (36%), Positives = 17/25 (68%) Frame = -3 Query: 124 VQSLDYIMSSNTASRPALRQRTGDS 50 V+ + +++S + +P+L QR GDS Sbjct: 425 VEHIGCVVTSPSNEKPSLSQRLGDS 449 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,401,868 Number of Sequences: 5004 Number of extensions: 26234 Number of successful extensions: 53 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 53 length of database: 2,362,478 effective HSP length: 64 effective length of database: 2,042,222 effective search space used: 100068878 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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