Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1115
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0105 - 14828097-14828226,14828371-14828547,14829690-148297... 31 0.24
11_04_0008 + 12115147-12115354,12115397-12116130 29 1.3
06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998 29 1.3
07_01_1057 + 9284549-9285237,9285334-9285797,9286023-9286556,928... 28 1.7
01_05_0659 - 24061318-24061575,24061664-24061918,24062001-240621... 27 2.9
12_02_0663 + 21653536-21653541,21654027-21654212,21654316-216543... 27 5.1
09_04_0631 - 19114785-19114825,19114911-19114995,19115092-191152... 26 6.7
09_04_0335 + 16791874-16792178,16792234-16792957 26 6.7
01_05_0607 + 23619271-23619426,23619479-23619552,23619917-236205... 26 6.7
07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561 26 8.9
06_01_1013 - 7931756-7935109 26 8.9
01_06_1172 - 35115248-35115874 26 8.9
>10_08_0105 -
14828097-14828226,14828371-14828547,14829690-14829739,
14829841-14829909,14829976-14830074,14830148-14830226,
14830587-14830687,14830794-14830862,14831019-14831059,
14831313-14831663,14831676-14832511,14832674-14832777,
14833587-14834003,14836108-14836491
Length = 968
Score = 31.1 bits (67), Expect = 0.24
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -3
Query: 220 N*NCSYSRYRQFCRVAPGEARHQKKLK--SACYVVQSLDYIMSSNTASRPALRQRTGDSD 47
N N Y R+R+ APG ++ +K SAC + + Y N A R R+ T D+
Sbjct: 456 NRNNEYQRHRENIAPAPGRSQQPLVMKNWSACNDISNKQY----NIAERLVRRRNTSDNA 511
Query: 46 TSDNRRGRPTAR 11
S ++ TA+
Sbjct: 512 ASSSQLAWSTAK 523
>11_04_0008 + 12115147-12115354,12115397-12116130
Length = 313
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 31 DGCRLCRCPRSADAGRDE 84
DGC L P SADAGRD+
Sbjct: 87 DGCGLAVAPCSADAGRDD 104
>06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998
Length = 391
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 154 GVEPPPAPRDKTGGTDCNYNFSFTP 228
GV PPP P D GG CN NFS P
Sbjct: 276 GVGPPPPPDDALGG-GCN-NFSSPP 298
>07_01_1057 +
9284549-9285237,9285334-9285797,9286023-9286556,
9286983-9287017
Length = 573
Score = 28.3 bits (60), Expect = 1.7
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 152 LVSSLPRRHAT-KLAVPTVTTILVLRHLRIRSDSRMIFDNILIKYSSHELTY 304
LV LP AT L++ T+ T+LVLRHLR + ++ +++ H +Y
Sbjct: 260 LVIVLPIATATVMLSLGTIATLLVLRHLRY----AQLLEDWELEFGPHRFSY 307
>01_05_0659 -
24061318-24061575,24061664-24061918,24062001-24062172,
24062258-24062381,24062442-24062485,24063601-24063734,
24063822-24063905,24064100-24064390,24064713-24065045,
24065145-24065389,24065644-24065910,24065997-24066157,
24066253-24066569,24066665-24066946,24067024-24067325,
24067398-24067488,24067796-24067849,24067963-24068039,
24068159-24068318,24068653-24068737,24069029-24069238,
24069344-24069732
Length = 1444
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 203 QSVPPVLSRGAGGGSTPKKIKISMLCGPKFR 111
++V PV+ G GGG KK+ + GP+ R
Sbjct: 72 RAVLPVVEEGGGGGEAGKKVVDVLSLGPQER 102
>12_02_0663 +
21653536-21653541,21654027-21654212,21654316-21654393,
21654581-21654694,21654799-21654865,21654954-21655015,
21655123-21655262,21655552-21655678,21655758-21655872,
21656111-21656199,21656593-21656733,21657067-21657192,
21657655-21657714,21658285-21658443
Length = 489
Score = 26.6 bits (56), Expect = 5.1
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -3
Query: 211 CSYSRYRQFCRVAPGEARHQKKLKSACYVVQSLDYIMSSNTASR 80
CS S Y Q+ R+ + + K A VVQ Y+ N R
Sbjct: 41 CSISSYDQWARIPVSGPLPKPRYKHAAAVVQEKMYVFGGNHNGR 84
>09_04_0631 -
19114785-19114825,19114911-19114995,19115092-19115286,
19115372-19115446,19115530-19115598,19115693-19115758,
19115847-19116062,19116155-19116508
Length = 366
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 1 AHSHAQWAGRDGCRLCRCPRSADAGRDE 84
A +HA G D R + P SA AG+D+
Sbjct: 79 AWAHATGGGGDNARKRKAPASAAAGKDK 106
>09_04_0335 + 16791874-16792178,16792234-16792957
Length = 342
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -2
Query: 92 YRLSSRPASADRGQRHK-RQPSRPAH 18
Y+L+SR A A +G RH+ R+P +P H
Sbjct: 240 YKLASR-ADAGQGPRHRARRPQQPWH 264
>01_05_0607 +
23619271-23619426,23619479-23619552,23619917-23620594,
23620711-23620815,23620877-23621003,23621613-23621773,
23621858-23622028,23622195-23622324,23622532-23622747,
23626821-23627348
Length = 781
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 86 LSSRPASADRGQRHKRQPSRPAH 18
L+S P + D+G R +R+P AH
Sbjct: 22 LASAPPARDKGLRRRRRPRMTAH 44
>07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561
Length = 62
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 182 SRGAGGGSTPKKIKISMLC 126
SRG GG T KKI + + C
Sbjct: 13 SRGGGGAKTTKKIVLKLQC 31
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 83 SSRPASADRGQRHKRQPSRPAH 18
S PAS DR Q+ +R+P R H
Sbjct: 57 SPNPASEDRPQQQQRRPRRRNH 78
>01_06_1172 - 35115248-35115874
Length = 208
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 230 GGVKLKL*LQSVPPVLSRGAGGGSTPKKIKISMLCGPKF 114
GG+K + L+S+P + G GGGS ++ +C +F
Sbjct: 94 GGLKKRA-LRSIPIEVYGGGGGGSPAAAAEVCAICLGEF 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,110,152
Number of Sequences: 37544
Number of extensions: 226846
Number of successful extensions: 646
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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