Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1115
         (342 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7499| Best HMM Match : zf-CCHC (HMM E-Value=0.00029)                29   0.99 
SB_4916| Best HMM Match : PspA_IM30 (HMM E-Value=3.7)                  29   0.99 
SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_37360| Best HMM Match : ETS_PEA3_N (HMM E-Value=0.65)               28   1.7  
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)                    28   2.3  
SB_24423| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_9811| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.3  
SB_53337| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_36271| Best HMM Match : Ebp2 (HMM E-Value=1.1)                      26   7.0  
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)                   26   9.2  

>SB_7499| Best HMM Match : zf-CCHC (HMM E-Value=0.00029)
          Length = 846

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = -3

Query: 205 YSRYRQFCRVAPGEARHQKKLKSACYVVQSLDYIMSSNTASRPALRQRTGDSDTSDNRRG 26
           Y  + +F ++  G+A  +           + +   SS  A RP   QRT  ++    R+G
Sbjct: 31  YPPFERFAKIIQGQANIKNNANVLASKATTTEVTPSSAHAPRPRREQRTFKTNAQPQRKG 90

Query: 25  R 23
           R
Sbjct: 91  R 91


>SB_4916| Best HMM Match : PspA_IM30 (HMM E-Value=3.7)
          Length = 331

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = -3

Query: 205 YSRYRQFCRVAPGEARHQKKLKSACYVVQSLDYIMSSNTASRPALRQRTGDSDTSDNRRG 26
           Y  + +F ++  G+A  +           + +   SS  A RP   QRT  ++    R+G
Sbjct: 238 YPPFERFAKIIQGQANIKNNANVLASKATTTEVTPSSAHAPRPRREQRTFKTNAQPQRKG 297

Query: 25  R 23
           R
Sbjct: 298 R 298


>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 124 PHNMLILIFFGVEPPPAPRDKT 189
           P N+L     G EPPP P  KT
Sbjct: 405 PSNLLTSFRLGTEPPPVPESKT 426


>SB_37360| Best HMM Match : ETS_PEA3_N (HMM E-Value=0.65)
          Length = 861

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 82  RPALRQRTGDSDTSDNRRGRPTA 14
           RP  RQRTG +D+S + R  P +
Sbjct: 539 RPGFRQRTGSTDSSGSPRSSPNS 561


>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
          Length = 2009

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 188  VLSRGAGGGSTPKKIKISMLCGPK 117
            V+  G G GSTP+ IK   + GPK
Sbjct: 1331 VIVNGEGNGSTPEMIKGLQITGPK 1354


>SB_24423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 536

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 154 GVEPPPAPRDKTGGTDCNYNFSFTPPSY*IGQ*NDF 261
           G++ PPA   K G   CN + SF PP    G+ ND+
Sbjct: 224 GIKDPPADWFKRGM--CNTHGSFQPPGSLHGRENDY 257


>SB_9811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 194 VPTVTTILVLRHLRIRSDSRMIFDNILIKYSSHELTYLFL 313
           V T+  +LVL  +  R + R + D  ++  +  +LTYLF+
Sbjct: 44  VGTIGNVLVLIVVAGRRERRTVNDIFILNLAISDLTYLFI 83


>SB_53337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 154 GVEPPPAPRDKTGGTDCNYNFSFTPPS 234
           G +PP  PR  T G   +    +TPPS
Sbjct: 562 GNQPPTEPRTSTPGDTKHLCLDYTPPS 588


>SB_36271| Best HMM Match : Ebp2 (HMM E-Value=1.1)
          Length = 383

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -3

Query: 205 YSRYRQFCRVAPGEARHQKKLKSACYVVQSLDYIMSSNT---ASRP 77
           +SRY +  + APG+ +   + +S+  +  SL  I S N+   ASRP
Sbjct: 264 HSRYTKESKEAPGDPKRITQSQSSLAIHSSLPDIRSENSELEASRP 309


>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
          Length = 933

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 154 GVEPPPAPRDKTGGTDCNYNFSFT 225
           G+EPPP  RD + G D    FS T
Sbjct: 164 GIEPPPGFRDNSQGGD-GLGFSIT 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,225,254
Number of Sequences: 59808
Number of extensions: 228794
Number of successful extensions: 521
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)