Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1115
         (342 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021491-4|CAA16374.2|  324|Caenorhabditis elegans Hypothetical ...    30   0.38 
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ...    27   2.7  
AF083232-1|AAD03690.1|  392|Caenorhabditis elegans nuclear recep...    27   2.7  
AF016438-10|AAK84533.2|  394|Caenorhabditis elegans Nuclear horm...    27   2.7  
AF016414-4|AAG24021.2|  230|Caenorhabditis elegans Serpentine re...    27   2.7  
Z46242-4|CAA86331.1|  340|Caenorhabditis elegans Hypothetical pr...    27   3.5  
U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical pr...    27   3.5  
AF101318-7|AAC69345.1|  826|Caenorhabditis elegans Hypothetical ...    27   3.5  
AL031630-7|CAA20982.1|  158|Caenorhabditis elegans Hypothetical ...    26   6.1  

>AL021491-4|CAA16374.2|  324|Caenorhabditis elegans Hypothetical
           protein Y44A6B.2 protein.
          Length = 324

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +2

Query: 161 SLPRRHATKLAVPTVTTILVLRHLRIRSDSRMIFDNILIKYSSHELTYLFL 313
           +L RR    +++ + + +  L  L  RS SR  FD  L+ +S+   ++LFL
Sbjct: 197 ALRRRRLNIVSISSTSNVHQLPPLATRSKSRQSFDRCLLLHSTITTSFLFL 247


>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
            protein Y79H2A.3a protein.
          Length = 2129

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
 Frame = +1

Query: 142  LIFFGVEPPPA-PRDKTGGTDCNYNFSFT--PP 231
            L FFGV PPPA P          Y  +FT  PP
Sbjct: 1241 LSFFGVPPPPAIPPQSAAAAAAGYPMTFTSRPP 1273


>AF083232-1|AAD03690.1|  392|Caenorhabditis elegans nuclear receptor
           NHR-18 protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 10  HAQWAGRDGCRLCRCPRSADAGRDERRY 93
           H    G+  C+ CR  +  D G D RR+
Sbjct: 52  HTSVNGKFNCKQCRLKKCLDVGMDTRRF 79


>AF016438-10|AAK84533.2|  394|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 18 protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 10  HAQWAGRDGCRLCRCPRSADAGRDERRY 93
           H    G+  C+ CR  +  D G D RR+
Sbjct: 54  HTSVNGKFNCKQCRLKKCLDVGMDTRRF 81


>AF016414-4|AAG24021.2|  230|Caenorhabditis elegans Serpentine
           receptor, class h protein210, isoform a protein.
          Length = 230

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = -2

Query: 167 GGSTPKK--IKISMLCGPKFRLHYE--FEYRLSSR 75
           G ST  K  I+I M C PK + H++  F YRL S+
Sbjct: 195 GWSTVTKLVIEIKMRCSPKTQWHFKKSFSYRLPSK 229


>Z46242-4|CAA86331.1|  340|Caenorhabditis elegans Hypothetical
           protein F35G12.5 protein.
          Length = 340

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/29 (44%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +2

Query: 170 RRHATKLAVPTVTTI-LVLRHLRIRSDSR 253
           +RHA K+AVP V ++ +V + + +RSD+R
Sbjct: 312 KRHAYKIAVPMVFSLNIVDKAVGVRSDAR 340


>U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical
           protein C06E7.4 protein.
          Length = 500

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 118 SLDYIMSSNTASRPALRQRTGDSDTSDNRRGRPTARVSE 2
           S D +   + A    +R R  D  TSD RRG PT R ++
Sbjct: 159 SYDDLHRMHEAPEIDVRMRQRDWRTSDERRGLPTRRETQ 197


>AF101318-7|AAC69345.1|  826|Caenorhabditis elegans Hypothetical
           protein Y73C8C.3 protein.
          Length = 826

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 170 RRHATKLAVPTVTTILVLRHLRIRSDSRMI 259
           RR+ T++A+ TV T L +R   ++SD  ++
Sbjct: 124 RRYETEVAMATVATYLKIRESVLKSDCELV 153


>AL031630-7|CAA20982.1|  158|Caenorhabditis elegans Hypothetical
           protein Y38H6C.8 protein.
          Length = 158

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 135 ADFNFFWCRASPGATRQNWRY 197
           AD+N FW  AS  A   NW +
Sbjct: 76  ADYNSFWIGASDAAHYTNWTW 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,159,303
Number of Sequences: 27780
Number of extensions: 167102
Number of successful extensions: 409
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)