Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1115
         (342 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    21   3.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   4.1  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   5.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   5.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   5.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   5.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   5.4  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   5.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   5.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   5.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   9.5  

>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +1

Query: 145 IFFGVEPPPAPRDKTGGTDCNYNFSFTPPS 234
           + F   PPP   D +G       + F PP+
Sbjct: 49  VLFPPGPPPNNEDSSGVIVGASGYGFVPPN 78


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 161  STPKKIKISMLCGPKFRLHYEFEYRLSSRPAS 66
            +T  ++K  +LCG  ++L+     ++ S P+S
Sbjct: 1457 ATSHELK-GLLCGNTYQLYLTSHNKIGSSPSS 1487


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 161  STPKKIKISMLCGPKFRLHYEFEYRLSSRPAS 66
            +T  ++K  +LCG  ++L+     ++ S P+S
Sbjct: 1453 ATSHELK-GLLCGNTYQLYLTSHNKIGSSPSS 1483


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 41 RQPSRPAHCACE 6
          +QP+RP++C  E
Sbjct: 4  KQPNRPSYCTWE 15


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 31  DGCRLCRCPRSADAGRDERRY 93
           DG R C   RS +  + +RRY
Sbjct: 248 DGERSCSRDRSREYKKKDRRY 268


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 31  DGCRLCRCPRSADAGRDERRY 93
           DG R C   RS +  + +RRY
Sbjct: 248 DGERSCSRDRSREYKKKDRRY 268


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 31  DGCRLCRCPRSADAGRDERRY 93
           DG R C   RS +  + +RRY
Sbjct: 248 DGERSCSRDRSREYKKKDRRY 268


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 31  DGCRLCRCPRSADAGRDERRY 93
           DG R C   RS +  + +RRY
Sbjct: 248 DGERSCSRDRSREYKKKDRRY 268


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 31  DGCRLCRCPRSADAGRDERRY 93
           DG R C   RS +  + +RRY
Sbjct: 248 DGERSCSRDRSREYKKKDRRY 268


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 31  DGCRLCRCPRSADAGRDERRY 93
           DG R C   RS +  + +RRY
Sbjct: 248 DGERSCSRDRSREYKKKDRRY 268


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 31  DGCRLCRCPRSADAGRDERRY 93
           DG R C   RS +  + +RRY
Sbjct: 248 DGERSCSRDRSREYKKKDRRY 268


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 216 KIVVTVGTASFVAWRRGRLDTKKN 145
           +I  + G + FVA+   + D KKN
Sbjct: 412 QIAFSRGCSGFVAFNGDQYDLKKN 435


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 135 ADFNFFWCRASPGATR 182
           +D+ F  CR  PG  R
Sbjct: 289 SDYGFTECRCDPGYFR 304



 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +2

Query: 188 LAVPTVTTILVLRHLRIRSDSRMIFDNILIKYSSHELT 301
           L +  + T+L+LR      + +   D   ++Y + E+T
Sbjct: 545 LVIIIIMTVLILRRASDECNKKQPSDCDTLEYRNGEVT 582


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,942
Number of Sequences: 438
Number of extensions: 2398
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)