Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1115
         (342 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family pr...    29   0.81 
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro...    27   2.5  
At1g69340.1 68414.m07956 appr-1-p processing enzyme family prote...    27   3.3  
At3g57340.2 68416.m06383 DNAJ heat shock N-terminal domain-conta...    27   4.3  
At3g57340.1 68416.m06382 DNAJ heat shock N-terminal domain-conta...    27   4.3  
At5g60720.1 68418.m07619 expressed protein contains Pfam profile...    26   5.7  
At4g24265.1 68417.m03482 expressed protein                             25   10.0 
At1g62670.1 68414.m07073 pentatricopeptide (PPR) repeat-containi...    25   10.0 
At1g31550.1 68414.m03871 GDSL-motif lipase, putative similar to ...    25   10.0 
At1g02060.1 68414.m00126 pentatricopeptide (PPR) repeat-containi...    25   10.0 

>At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 760

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 178 VAPGEARHQKKLKSACYVVQSLDYIMSSNTASRPALRQRTGDSDTSDNR 32
           ++PG++    + +S C VV S+DY+ S    +   L      S+ S  +
Sbjct: 390 LSPGQSYTHSRSESVCSVVSSVDYVPSVTHETESILGNHQSSSEMSPKK 438


>At1g70140.1 68414.m08071 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 760

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 194 PPVLSRGAGGGSTPKKIKISML 129
           PP   RGA GG T K++K+  L
Sbjct: 288 PPAPVRGASGGETSKQVKLKPL 309


>At1g69340.1 68414.m07956 appr-1-p processing enzyme family protein
           contains Pfam domain PF01661: Appr-1-p processing enzyme
           family
          Length = 562

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 142 KSACYVVQSLDYIMS-SNTASRPALRQRTGDSDTSDNRRGRPTARVSE 2
           +S  YVV +LD I   S+   R +L   TGD + S+ R   P A  SE
Sbjct: 19  ESGDYVV-TLDQIPRWSDVEQRSSLEDETGDPEHSNPRYANPLASSSE 65


>At3g57340.2 68416.m06383 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 Mus musculus; contains
           Pfam profile PF00226 DnaJ domain
          Length = 367

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -3

Query: 100 SSNTASRPALRQRTGDSDTSDN 35
           SSN++ RP+LRQR G S TS +
Sbjct: 72  SSNSSDRPSLRQR-GSSTTSSS 92


>At3g57340.1 68416.m06382 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 Mus musculus; contains
           Pfam profile PF00226 DnaJ domain
          Length = 367

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -3

Query: 100 SSNTASRPALRQRTGDSDTSDN 35
           SSN++ RP+LRQR G S TS +
Sbjct: 72  SSNSSDRPSLRQR-GSSTTSSS 92


>At5g60720.1 68418.m07619 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 691

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = -3

Query: 160 RHQKKLKSACYVVQSLD----YIMSSNTASRPALRQRTGDSDTSDNRRGR 23
           RH++ +    Y V++ D    + +S  T S PA+R  TG+  T++  + +
Sbjct: 544 RHEEMIIRKLYGVEATDPNITFALSCGTRSSPAVRIYTGEGVTTELEKSK 593


>At4g24265.1 68417.m03482 expressed protein
          Length = 140

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
 Frame = -2

Query: 59 RGQRHKRQ--PSRPAHCACE 6
          R +R ++Q  PS+P HC+CE
Sbjct: 9  RKKRKRKQACPSQPHHCSCE 28


>At1g62670.1 68414.m07073 pentatricopeptide (PPR) repeat-containing
           protein contains multiple PPR repeats Pfam Profile:
           PF01535
          Length = 630

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 141 FNFFWCRASPGATRQNWRYRL 203
           F+FFW RA  G T  ++R +L
Sbjct: 32  FSFFWRRAFSGKTSYDYREKL 52


>At1g31550.1 68414.m03871 GDSL-motif lipase, putative similar to
           lipase [Arabidopsis thaliana] GI:1145627; contains
           InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L
           family
          Length = 391

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 263 QKSFYCPI*YEGGVKLKL*LQSVP 192
           +K ++CP  +  GV+LK+  QS+P
Sbjct: 130 EKGYHCPHNFSLGVQLKIFKQSLP 153


>At1g02060.1 68414.m00126 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 710

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 152 LVSSLPRRHATKLAVPTVTTILVLRHLRIRSDSRMIFDNILIKYSSHELTYLFLV 316
           L SSL   H ++  +   T +  LR +++ +D    FD +  K  SH+    FL+
Sbjct: 53  LESSLSSLHPSQ-TISRTTVLQTLRLIKVPADGLRFFDWVSNKGFSHKEQSFFLM 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,589,903
Number of Sequences: 28952
Number of extensions: 153661
Number of successful extensions: 375
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)