Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1111
(666 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 301 4e-82
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 256 9e-69
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 163 9e-41
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 163 9e-41
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 152 2e-37
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 8e-32
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 125 3e-29
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 3e-28
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 119 2e-27
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 118 3e-27
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 118 3e-27
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 3e-24
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 108 3e-24
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 105 4e-23
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 100 1e-21
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 99 2e-21
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 98 5e-21
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 96 3e-20
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 5e-17
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 81 1e-15
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 3e-15
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 79 4e-15
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 2e-14
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 2e-14
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 69 3e-12
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 64 7e-11
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 62 5e-10
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 59 3e-09
SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8) 48 5e-06
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 48 7e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 48 9e-06
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 47 2e-05
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 43 3e-04
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 43 3e-04
SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6) 42 6e-04
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 39 0.004
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21) 33 0.21
SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07) 33 0.28
SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55) 30 1.9
SB_55048| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_39648| Best HMM Match : DUF1110 (HMM E-Value=1.7) 29 2.6
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07) 29 4.5
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 28 5.9
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0) 28 5.9
SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_26279| Best HMM Match : S-antigen (HMM E-Value=3) 28 7.9
SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08) 28 7.9
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 301 bits (738), Expect = 4e-82
Identities = 157/228 (68%), Positives = 176/228 (77%), Gaps = 28/228 (12%)
Frame = +3
Query: 66 GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ------------ 209
G ++WD+VVE+FDDMNLKE LLRGIYAYGFEKPSAIQQRAI PC Q
Sbjct: 52 GKRQSNWDEVVESFDDMNLKEALLRGIYAYGFEKPSAIQQRAIRPCCQEFSPSHVCYNQL 111
Query: 210 ----------GRDVIAQAQSGTGKTATFSISILQQIDTSIRE------CQALILAPTREL 341
RDVIAQAQSGTGKTATF+ISILQ+IDT+ ++ CQAL+LAPTREL
Sbjct: 112 NLTKNHYVLSARDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTREL 171
Query: 342 AQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHA 521
AQQIQKVV+ALGD+++ KCHACIGGTNVRED +LE GVHVVVGTPGRV+DMI R L+
Sbjct: 172 AQQIQKVVLALGDYMHVKCHACIGGTNVREDRMKLEEGVHVVVGTPGRVFDMINRGVLNT 231
Query: 522 NTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVL 665
IKLFVLDEADEMLSRGFKDQI+DVF L VQV+LLSATMP DVL
Sbjct: 232 RDIKLFVLDEADEMLSRGFKDQIYDVFTRLPTSVQVVLLSATMPTDVL 279
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 256 bits (628), Expect = 9e-69
Identities = 119/170 (70%), Positives = 147/170 (86%)
Frame = +3
Query: 156 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTR 335
GFEKPSAIQQRAI P ++GRDVIAQAQSGTGKTATFSIS+LQ IDT +RE QAL+L+PTR
Sbjct: 16 GFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQLREPQALVLSPTR 75
Query: 336 ELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRAL 515
ELA QIQKVV+ALGD+++ +CHACIGGTN+ EDIR+L+ G H+V GTPGRV+DMI RR L
Sbjct: 76 ELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQHIVSGTPGRVFDMIRRRNL 135
Query: 516 HANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVL 665
+IK+ VLDEADEML++GFK+QI+DV++ L QV+LLSAT+P ++L
Sbjct: 136 RTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLLSATLPHEIL 185
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 163 bits (397), Expect = 9e-41
Identities = 81/193 (41%), Positives = 125/193 (64%), Gaps = 7/193 (3%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 284
F+D LK ELL GI+ GF+KPS IQ+ +I + GRD++A+A++GTGKTA + + +L++
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 285 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG--- 455
DT+ QAL+L PTRELA Q ++ I LG H+ A+ GGT++++DI +L +
Sbjct: 109 TDTTKNCIQALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTSLKDDILRLYNKDIF 168
Query: 456 ----VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV 623
VHV+V TPGRV D++ ++ + ++ V+DEAD++LS FK + + K L +
Sbjct: 169 VHVVVHVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENR 228
Query: 624 QVILLSATMPDDV 662
Q++L SAT P V
Sbjct: 229 QILLFSATFPISV 241
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 163 bits (397), Expect = 9e-41
Identities = 81/193 (41%), Positives = 125/193 (64%), Gaps = 7/193 (3%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 284
F+D LK ELL GI+ GF+KPS IQ+ +I + GRD++A+A++GTGKTA + + +L++
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 285 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG--- 455
DT+ QAL+L PTRELA Q ++ I LG H+ A+ GGT++++DI +L +
Sbjct: 109 TDTTKNCIQALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTSLKDDILRLYNKDIF 168
Query: 456 ----VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV 623
VHV+V TPGRV D++ ++ + ++ V+DEAD++LS FK + + K L +
Sbjct: 169 VHVVVHVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENR 228
Query: 624 QVILLSATMPDDV 662
Q++L SAT P V
Sbjct: 229 QILLFSATFPISV 241
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 152 bits (369), Expect = 2e-37
Identities = 80/185 (43%), Positives = 117/185 (63%), Gaps = 1/185 (0%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 284
F + L LLRG+ GFEKPS IQ +AI G D+IAQA+SGTGKT FS+ L+
Sbjct: 15 FHSLLLSPTLLRGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIALEN 74
Query: 285 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTNVREDIRQLESGVH 461
+ T Q +IL PTRE+A Q++ V+ A+G H + C IGG ++ ED + L+S H
Sbjct: 75 VITESNCIQIIILTPTREIAVQVKDVICAIGCHYDGLACKVFIGGISLEEDKKALKS-CH 133
Query: 462 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 641
+ VGTPGRV +I ++ L ++++F+LDEAD++L F+ QI+ +F L + Q++ S
Sbjct: 134 IAVGTPGRVKYLIEQKYLKTESVRMFILDEADKLLDESFQQQINWIFSALPENKQMMAFS 193
Query: 642 ATMPD 656
AT P+
Sbjct: 194 ATYPE 198
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 134 bits (323), Expect = 8e-32
Identities = 71/198 (35%), Positives = 113/198 (57%), Gaps = 9/198 (4%)
Frame = +3
Query: 96 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 275
+ +F+++ E+L+ I G+ +P+ +Q+ A+ + GRD++A AQ+G+GKTA + + +
Sbjct: 478 ITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSGKTAAYMLPV 537
Query: 276 L-----QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 440
L Q ++ R AL +APTRELA+QI DH K C GG +V
Sbjct: 538 LTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKFSDHTPIKVCVCYGGVSVPYQAS 597
Query: 441 QLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSAD 620
QLE G H +VGTPGR+ D ++R ++ +I+ +LDEAD ML GF IH + + +
Sbjct: 598 QLERGCHFLVGTPGRLQDFVSREKIYLGSIQHLILDEADRMLDLGFGPDIHKLIEESNMT 657
Query: 621 V----QVILLSATMPDDV 662
Q ++ SAT PD++
Sbjct: 658 AKESRQTLMFSATFPDEI 675
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 125 bits (302), Expect = 3e-29
Identities = 74/194 (38%), Positives = 114/194 (58%), Gaps = 5/194 (2%)
Frame = +3
Query: 99 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDV--IAQAQSGTGKTATFSIS 272
++F+++ L L RG+Y GF KPS IQ+ A+ + V IAQ+QSGTGKTA F ++
Sbjct: 103 KSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVNMIAQSQSGTGKTAAFVLT 162
Query: 273 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLE 449
+L ++D + Q + L+PT ELA+Q KV A+G H + K + + G R +
Sbjct: 163 MLSRVDATKPYPQVICLSPTYELARQTGKVAEAMGKHCPHIKINYAVRGNQFP---RGQK 219
Query: 450 SGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLS-RGFKDQIHDVFKMLSADV 623
H+++GTPG + D I + + + +FVLDEAD M++ +G +DQ + K L D
Sbjct: 220 CTDHIIIGTPGTLLDWIRKSKCFEPRKVSVFVLDEADIMIALQGHQDQSIRIHKSLHKDC 279
Query: 624 QVILLSATMPDDVL 665
QV+L SAT +DV+
Sbjct: 280 QVLLFSATYDEDVM 293
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 122 bits (293), Expect = 3e-28
Identities = 68/202 (33%), Positives = 113/202 (55%), Gaps = 13/202 (6%)
Frame = +3
Query: 96 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 275
+ +F++ NL E L + ++KP+ +Q+ +I I GRDV+A AQ+G+GKTA F + +
Sbjct: 710 INSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGKTAAFLLPV 769
Query: 276 LQQI------DTSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 428
+ + +S E Q A+ +APTRELA QI + C GG +V
Sbjct: 770 MTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEARKFAHGTMLRPVVCYGGVSVS 829
Query: 429 EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKM 608
+RQL+SG +++VGTPGR+ D I + + ++ +LDEAD ML GF+ I + +
Sbjct: 830 HQLRQLQSGCNLLVGTPGRLTDFIEKGKVSLKGLQFLILDEADRMLDMGFEPAIRRIVES 889
Query: 609 L----SADVQVILLSATMPDDV 662
+ ++ Q ++ SAT P+++
Sbjct: 890 MGMPDKSERQTLMFSATFPEEI 911
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 119 bits (286), Expect = 2e-27
Identities = 68/186 (36%), Positives = 102/186 (54%), Gaps = 1/186 (0%)
Frame = +3
Query: 102 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 281
+F + L + L+ A G +KP+ IQ + P +QGRD I A++G+GKTA F++ ILQ
Sbjct: 8 SFAGLGLNKWLVSQCVAMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQ 67
Query: 282 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 461
++ A++L PTRELA QI LG + K +GG ++ + L + H
Sbjct: 68 KLCDDPYGIFAVVLTPTRELAFQIADQFKVLGRPIGLKEAVIVGGLDMMKQALSLANKPH 127
Query: 462 VVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 638
VV+ TPGR+ D I + L+ I+ VLDEAD +L F D + +F + Q +L
Sbjct: 128 VVIATPGRLADHIKSTDTLNLKKIQFLVLDEADRLLDPSFGDDLKVIFDAVPEKRQTLLF 187
Query: 639 SATMPD 656
SAT+ D
Sbjct: 188 SATLTD 193
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 118 bits (285), Expect = 3e-27
Identities = 65/158 (41%), Positives = 91/158 (57%), Gaps = 2/158 (1%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 284
F D LK ELLR I GFE PS +Q I I G D+I QA+SG GKTA F ++ LQQ
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATLQQ 108
Query: 285 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESGV- 458
++ + L++ TRELA QI K ++ N K GG N+++D + L++
Sbjct: 109 LEPVDGQVSVLVMCHTRELAFQIHKEYERFCKYMSNIKIAVFFGGINIKKDQQTLKTNCP 168
Query: 459 HVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 572
H+VVGTPGR+ + + L+ K F+LDE D+ML +
Sbjct: 169 HIVVGTPGRILALTREKTLNLKHAKHFILDECDKMLEQ 206
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 118 bits (285), Expect = 3e-27
Identities = 65/158 (41%), Positives = 91/158 (57%), Gaps = 2/158 (1%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 284
F D LK ELLR I GFE PS +Q I I G D+I QA+SG GKTA F ++ LQQ
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATLQQ 108
Query: 285 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLESGV- 458
++ + L++ TRELA QI K ++ N K GG N+++D + L++
Sbjct: 109 LEPVDGQVSVLVMCHTRELAFQIHKEYERFCKYMSNIKIAVFFGGINIKKDQQTLKTNCP 168
Query: 459 HVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 572
H+VVGTPGR+ + + L+ K F+LDE D+ML +
Sbjct: 169 HIVVGTPGRILALTREKTLNLKHAKHFILDECDKMLEQ 206
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 109 bits (261), Expect = 3e-24
Identities = 61/188 (32%), Positives = 110/188 (58%), Gaps = 6/188 (3%)
Frame = +3
Query: 117 NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SISILQQI 287
++ E+ L+GI GF + IQ ++I P ++GRD++ A++G+GKT F + +L ++
Sbjct: 578 DVSEKTLQGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVVELLYKL 637
Query: 288 DTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 464
R +I++PTREL+ Q V L H N +GG N + + +L+ GV++
Sbjct: 638 QFKTRNGTGVIIISPTRELSLQTYGVARDLLKHHNFTYGIIMGGVNRKAEAERLQKGVNL 697
Query: 465 VVGTPGRVYDMI--TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 638
++ TPGR+ D + T+ L+ N ++ V+DEAD +L GF++++ + ++L + Q +L
Sbjct: 698 LIATPGRLLDHLQNTQGFLYKN-LQCLVIDEADRILEIGFEEEMRQIIRILPSKRQTVLF 756
Query: 639 SATMPDDV 662
SAT +V
Sbjct: 757 SATQTKNV 764
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 108 bits (260), Expect = 3e-24
Identities = 64/194 (32%), Positives = 109/194 (56%), Gaps = 5/194 (2%)
Frame = +3
Query: 96 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 275
VE F D + + L G+ GF P+ IQ++ I + GRDV+ A++G+GKT F I I
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPI 108
Query: 276 LQ----QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 443
++ Q TS+ AL+++PTRELA Q +V++ +G+ + IGG +++ + ++
Sbjct: 109 IETLWRQKWTSMDGLGALVISPTRELAYQTFEVLVKIGNKHDLSAGLIIGGKDLKNEQKR 168
Query: 444 LESGVHVVVGTPGRVYD-MITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSAD 620
+ ++VV TPGR+ M ++++ VLDEAD +L GF ++ + + L ++
Sbjct: 169 IMK-TNIVVCTPGRLLQHMDETPNFDCTSLQILVLDEADRILDMGFAPTLNAIIENLPSE 227
Query: 621 VQVILLSATMPDDV 662
Q +L SAT V
Sbjct: 228 RQTLLYSATQTRSV 241
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 105 bits (251), Expect = 4e-23
Identities = 45/65 (69%), Positives = 58/65 (89%)
Frame = +3
Query: 297 IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT 476
+RE QAL+L+PTRELA QIQKVV+ALGD+++ +CHACIGGTN+ EDIR+L+ G H+V GT
Sbjct: 1 LREPQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQHIVSGT 60
Query: 477 PGRVY 491
PGRV+
Sbjct: 61 PGRVF 65
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 100 bits (239), Expect = 1e-21
Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 11/226 (4%)
Frame = +3
Query: 9 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 188
K +KD+ +D G++P + D F + ++ + + G IQ
Sbjct: 50 KRKTAKDESEFD--EGVEPSVAQREGD-----FSKFRISQKTIDNLEDRGITYLFPIQAS 102
Query: 189 AIMPCIQGRDVIAQAQSGTGKTATFSISILQQI-DTSI-----RECQALILAPTRELAQQ 350
G DVI QA++GTGKT +F++ +++++ D + R + L++APTRELA+Q
Sbjct: 103 TFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTRELAKQ 162
Query: 351 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTI 530
+ L +L C GG + SG+ V+VGTPGR+ D + + L + +
Sbjct: 163 VGNEFENLKSNLEVYC--IYGGMPYEPQENAINSGLDVLVGTPGRILDFMRQGTLDLSKL 220
Query: 531 KLFVLDEADEMLSRGFKDQIHDVFKMLSAD-----VQVILLSATMP 653
K VLDE D ML GF + + +V A+ Q +L SAT+P
Sbjct: 221 KHVVLDEVDRMLDMGFAESVEEVLAASYAEDREDKPQTLLFSATLP 266
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 99 bits (238), Expect = 2e-21
Identities = 48/116 (41%), Positives = 66/116 (56%)
Frame = +3
Query: 315 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 494
L+L PTRELAQQ+Q+V ++G H + GG IR+LE GV + + TPGR+ D
Sbjct: 136 LVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPKGPQIRELERGVEICIATPGRLID 195
Query: 495 MITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 662
M+ R + VLDEAD ML GF+ QI + + D Q ++ SAT P +V
Sbjct: 196 MLESRKTNLRRCTYLVLDEADRMLDMGFEPQIRTIIDQIRPDRQTLMWSATWPKEV 251
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 98.3 bits (234), Expect = 5e-21
Identities = 58/173 (33%), Positives = 86/173 (49%), Gaps = 5/173 (2%)
Frame = +3
Query: 102 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS----I 269
+F E+++ I + +P+ IQ +A+ + GRD+I A++G+GKTA F +
Sbjct: 518 SFAHFGFDEQMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALV 577
Query: 270 SILQQIDTSIRECQ-ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 446
I+ Q + + + LI APTREL QQI G N A GG N E + L
Sbjct: 578 HIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRFGKAYNIHVVAVFGGGNKYEQSKAL 637
Query: 447 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK 605
+ G +VV TPGR+ D + +A + + + V DEAD M GF FK
Sbjct: 638 QEGAEIVVATPGRLIDHVKAKATNLHRVTYLVFDEADRMFDMGFALLFSATFK 690
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 95.9 bits (228), Expect = 3e-20
Identities = 51/132 (38%), Positives = 76/132 (57%), Gaps = 3/132 (2%)
Frame = +3
Query: 213 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 392
+DVI A++G+GKT F++ ILQ + + + ALIL PTRELA QI + ALG +
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNPQRLFALILTPTRELAFQISEQCEALGSGIGV 61
Query: 393 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLS 569
KC +GG ++ L H+++ TPGR+ D + + T+K V+DEAD +L+
Sbjct: 62 KCAVIVGGIDMMSQALMLAKKPHIIIATPGRLIDHLENTKGFSLRTLKYLVMDEADRILN 121
Query: 570 RGF--KDQIHDV 599
F +D IH V
Sbjct: 122 MDFEKEDYIHRV 133
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 85.0 bits (201), Expect = 5e-17
Identities = 64/194 (32%), Positives = 103/194 (53%), Gaps = 8/194 (4%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG-RDVIAQAQSGTGKTATFSISILQ 281
F+D++L E LL + G++KP+ +Q+ AI P ++G RD++A AQ+G+GKT
Sbjct: 877 FEDVDLGEILLHNVGLAGYKKPTPVQKYAI-PIVKGKRDLMACAQTGSGKT--------- 926
Query: 282 QIDTSIRECQALILAPTRELAQQIQKVVIALGDH-LNAKCHACI--GGTNVREDIRQLES 452
A L P L++ + A D + C C+ GG ++ +R+L+
Sbjct: 927 ----------AAFLIPI--LSRIYMEGPPAPPDFSYRSLCRPCVVYGGADIGSQLRELDR 974
Query: 453 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIH---DVFKMLSADV 623
H++V TPGR+ DM+ R + ++I+ VLDEAD ML GF+ QI D M +
Sbjct: 975 NCHLLVATPGRLVDMMDRGRVGLDSIRFLVLDEADRMLDMGFEPQIRRIVDQDSMPKTGI 1034
Query: 624 -QVILLSATMPDDV 662
Q ++ SAT P ++
Sbjct: 1035 RQTLMFSATFPKEI 1048
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 80.6 bits (190), Expect = 1e-15
Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 30/224 (13%)
Frame = +3
Query: 81 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 260
D + +E+F D+NL EL + F+ P+ IQ +++ + GRD+I A++G+GKT
Sbjct: 66 DCPKPIESFHDLNLPPELSTYLAKKNFQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLA 125
Query: 261 FSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNA----------- 392
+S+ + + T ALIL PTREL QQ+ V + D +
Sbjct: 126 YSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQVFMNVSEMLDVIRCPGNPGPSNQSV 185
Query: 393 -----------KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLF 539
K A GG V L G VVV TPGR+ D+ I
Sbjct: 186 IYDTQQFTARYKAVAVCGGVPVSTQTIALREGADVVVATPGRLLDLY--------KITYL 237
Query: 540 VLDEADEMLSRGFKDQIHDVFKM---LSADVQVILLSATMPDDV 662
V+DE D ML G ++Q+ + + S Q +L SAT+P+ +
Sbjct: 238 VMDEPDRMLGMGMEEQLRKIVGLATGTSRARQTLLWSATLPESL 281
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 79.0 bits (186), Expect = 3e-15
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 20/162 (12%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI-QGRDVIAQAQSGTGKTATFSISILQ 281
++ + + ++LR + GF KP+ IQ +I P + RD+I A++G+GKT F I I+Q
Sbjct: 132 WEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQ 191
Query: 282 QIDT--------------SIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHA 404
I+ S E Q ALI+APTRELA Q++ ++ + + K A
Sbjct: 192 HIEAYKKRKAEQSPSDKESDLESQGYPLLALIMAPTRELALQVKDHLVKAAKYTSVKVAA 251
Query: 405 CIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTI 530
+GG + R L+ +VV TPGR++++I++ H +
Sbjct: 252 IVGGMAAPKQQRLLKQRPEIVVATPGRLWELISQVFTHGKPL 293
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +3
Query: 456 VHVVVGTPGRVYDMITRRALHANTIKLF---VLDEADEMLSRGFKDQIHDVFKML 611
V VVV V +T + H + I+L V+DEAD M+ +G +++ + +++
Sbjct: 313 VAVVVVVVVVVDTSVTNQEKHVSNIQLLRYLVIDEADRMVEQGHYEELSSILELI 367
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 78.6 bits (185), Expect = 4e-15
Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 12/200 (6%)
Frame = +3
Query: 54 GMDPG-TLDTD--WDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVI 224
G +P T D+D + Q V +F + L++++L+ + A +P+ IQ I I VI
Sbjct: 360 GQNPAFTPDSDMAFRQRVYSFAGLGLRDDVLKALDALNIHQPTVIQMVTIPKIIHRHHVI 419
Query: 225 AQAQSGTGKTATFSISILQQIDTS---------IRECQALILAPTRELAQQIQKVVIALG 377
AQ+G+GKT + ++ ++ ++ +A I+ P RELA QI K +L
Sbjct: 420 CAAQTGSGKTLAYLAPLVHRLREDEERHGILARLKRPRACIVVPARELATQILKTAKSLC 479
Query: 378 DHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 557
H + IGG + LES V ++V TPG + + L + + V+DEAD
Sbjct: 480 HHARFRSVGLIGGRKQKWMRDDLESPVDLLVATPGTLLKYRQKDRLFFSDLTHLVIDEAD 539
Query: 558 EMLSRGFKDQIHDVFKMLSA 617
M FK ++ +++
Sbjct: 540 TMFDASFKSLTMEILHTINS 559
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 76.2 bits (179), Expect = 2e-14
Identities = 45/129 (34%), Positives = 64/129 (49%), Gaps = 11/129 (8%)
Frame = +3
Query: 300 RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTP 479
R+ A+++ PTRELA QI + N +C GGT + E I +L+ G ++V TP
Sbjct: 143 RDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYGGTGISEQIAELKRGAEIIVCTP 202
Query: 480 GRVYDMITR---RALHANTIKLFVLDEADEMLSRGFKDQIHD--------VFKMLSADVQ 626
GR+ DM+T R + VLDEAD M GF+ QI + + D Q
Sbjct: 203 GRMIDMLTANNGRVTNCQRCTYLVLDEADRMFDMGFEPQITKIRYPKVMRIIDCIRPDRQ 262
Query: 627 VILLSATMP 653
++ SAT P
Sbjct: 263 TVMFSATFP 271
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 76.2 bits (179), Expect = 2e-14
Identities = 33/44 (75%), Positives = 37/44 (84%)
Frame = +3
Query: 384 LNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRAL 515
++ KCHACIGGTNVRED +LE GVHVVVGTPGRV+DMI R L
Sbjct: 1 MHVKCHACIGGTNVREDRMKLEEGVHVVVGTPGRVFDMINRGVL 44
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 69.7 bits (163), Expect = 2e-12
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Frame = +3
Query: 204 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALG 377
+ G+DV+A A++G+GKTA F I + +++ T + +ALIL+PTRELA Q QK + LG
Sbjct: 316 MDGKDVVAMARTGSGKTAAFLIPMFEKLQTHTAKVGIRALILSPTRELALQTQKFIKELG 375
Query: 378 DHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 557
K +GG + VV TPGR ++ L ++++ V DEAD
Sbjct: 376 RFTGLKSSVILGGDS--------------VVATPGRFLHVVMEMELKLSSVEYVVFDEAD 421
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 68.9 bits (161), Expect = 3e-12
Identities = 39/118 (33%), Positives = 70/118 (59%), Gaps = 9/118 (7%)
Frame = +3
Query: 96 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 275
+ + + + + +L + G++ P+ IQ++AI +Q RD+I A++G+GKTA F+I +
Sbjct: 100 IRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFAIPL 159
Query: 276 L---------QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 422
L ++ + + + ALILAPTRELAQQI++ ++ G L + + IGG +
Sbjct: 160 LVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFGRPLGIRTVSVIGGAD 217
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 64.5 bits (150), Expect = 7e-11
Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 4/158 (2%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 284
F + + +L+ + G KP IQ++A+ + ++ ++++GTGK+ F +L
Sbjct: 162 FSNFGVHPKLVEKLKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVF---LLPS 218
Query: 285 IDTSIRECQALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 461
+ R +I+ PTRELA Q + +V LGD + + + G ++ + L+ +H
Sbjct: 219 VQDPGRGYGTIIVVPTRELASQMLYEVSRLLGD--KSIVASFVSGVDLSRQEKLLKDSLH 276
Query: 462 ---VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 566
+V+GTP R+++++ K V+DE D+ L
Sbjct: 277 PPRIVIGTPKRLWEIVQEHEHLFQRTKRIVIDEVDKTL 314
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 61.7 bits (143), Expect = 5e-10
Identities = 29/72 (40%), Positives = 45/72 (62%)
Frame = +3
Query: 447 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 626
E GV V+V TPGR+ ++I+R+A+ + V+DE D ML GF+ Q+ + + LS Q
Sbjct: 253 EMGVQVIVATPGRMVEIISRQAVDLTHVIGCVVDEVDTMLQLGFEQQVQQILERLSNRRQ 312
Query: 627 VILLSATMPDDV 662
+L SAT+P +
Sbjct: 313 TMLFSATIPPSI 324
Score = 35.5 bits (78), Expect = 0.039
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 251
F + E L + + +G+ P+ IQ + + + GRDV+ A +G+GK
Sbjct: 198 FFHCSFNESLSKNLSNHGYHSPTPIQMQVLPVLLSGRDVMVCASTGSGK 246
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 59.3 bits (137), Expect = 3e-09
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Frame = +3
Query: 87 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS 266
D+V+ +D ++ + E R + GF P+ IQ I + G+DV A A +GTGKTA F
Sbjct: 7 DEVLNAYDSLDEEAED-RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFM 65
Query: 267 ISILQQI---DTSIRECQALILAPTRELAQQ 350
+ IL+++ T + L++ PTRELA Q
Sbjct: 66 LPILERLLYRPTQSPAIRVLVITPTRELAIQ 96
>SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)
Length = 210
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/38 (55%), Positives = 29/38 (76%)
Frame = +3
Query: 513 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 626
L +IK+ VLDEADEML++GFK+QI+DV++ L Q
Sbjct: 31 LDTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 68
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +3
Query: 456 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 611
V +V GTPG++ D IT + + +K F+LDEAD +L++G D I ++ +
Sbjct: 136 VDIVTGTPGKLNDFITTDKISLHQVKFFILDEADGLLAQGNNDLIMKIYNKI 187
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 47.6 bits (108), Expect = 9e-06
Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 8/126 (6%)
Frame = +3
Query: 309 QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG--VHVVVGTPG 482
+A++++PTRELAQQI + L + H + N + +S ++V TP
Sbjct: 207 RAVVVSPTRELAQQIYREFCHLAKGCAFRIHV-LTKANASTNTFGAKSSKRFDILVTTPN 265
Query: 483 RVYDMITRR--ALHANTIKLFVLDEADEMLSR---GFKDQIHDVFKMLS-ADVQVILLSA 644
R+ ++T+ + + ++ +LDEAD++ GF++QI +++ + D+ L SA
Sbjct: 266 RLVHLLTQEPPGIELHNVEWLILDEADKLFEEGKDGFREQIATIYQACNKPDIHRGLFSA 325
Query: 645 TMPDDV 662
T+ + +
Sbjct: 326 TLSNGI 331
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/53 (39%), Positives = 35/53 (66%)
Frame = +3
Query: 96 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKT 254
+ +F++ NL E L + ++KP+ +Q+ +I I GRDV+A AQ+G+GKT
Sbjct: 133 INSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGKT 185
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +3
Query: 531 KLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 662
+ VLDEAD M+ GF++ + +F + Q +L SATMP +
Sbjct: 18 RYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKI 61
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +3
Query: 531 KLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 662
+ VLDEAD M+ GF++ + +F + Q +L SATMP +
Sbjct: 18 RYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKI 61
>SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6)
Length = 127
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/45 (46%), Positives = 26/45 (57%)
Frame = +3
Query: 528 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 662
+++ VLDEAD ML GF I V L A Q +L SAT DD+
Sbjct: 4 VEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 48
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 38.7 bits (86), Expect = 0.004
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Frame = +3
Query: 156 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRE-------CQ 311
G P+++Q+ ++GRDV A G+GK + + I+ QI ++S+ +
Sbjct: 206 GVTVPTSLQKHMWPSLLRGRDVAGVAIEGSGKRLAYLLPIIHQITESSVYQELPLANGPL 265
Query: 312 ALILAPTRELAQQIQKVVIAL-GDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRV 488
LIL + ++ V L + + GG + I L +G V+V TP
Sbjct: 266 VLILCTNWQNTARVYGVCEDLIRNRRRTRVQMIFGGGAEEDRIVPLINGCEVLVATPPCF 325
Query: 489 YDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHD 596
M+ R + + V D+AD ML+ F +I D
Sbjct: 326 LRMLKRCYTSLDRLCHVVFDDAD-MLAEYFTAEIKD 360
>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
Length = 1728
Score = 33.1 bits (72), Expect = 0.21
Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 1/174 (0%)
Frame = +3
Query: 144 IYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALIL 323
I+ Y P Q I+ ++++ +G GKT ++ ++ + + + +
Sbjct: 105 IWIYPTNYPVRDYQFNIVQKALYQNIMVTLPTGLGKTFIAAV-VMYNYYRWYPQGKVVFM 163
Query: 324 APTREL-AQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI 500
APT+ L AQQI+ +G + A + G L V TP + + +
Sbjct: 164 APTKPLVAQQIEACYKIMG--IPQTDTAEMTGNMAPTKRENLWRTKRVFFLTPQVLQNDL 221
Query: 501 TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 662
+R + A + L V+DEA + L Q+ + + +V+ LSAT DD+
Sbjct: 222 SRGSCAAADVVLLVVDEAHKALGNHSYCQVVREILSYTTNFRVLALSATPGDDI 275
>SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07)
Length = 721
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = -1
Query: 519 HEAHDELSYHIHDLECPP---PHEHHSPVGEYLHGHWC 415
HE ++Y H+ CP PHEH P+ H H C
Sbjct: 657 HENMGPMNYLSHEHMCPMNNVPHEHMGPINNVSHEHMC 694
>SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPC-IQGRDVIAQAQS 239
++ + + ++LR + GF KP+ IQ +I P + RD+I A++
Sbjct: 74 WEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAET 119
>SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/44 (40%), Positives = 19/44 (43%)
Frame = +3
Query: 45 GPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSA 176
GPPG GT D VVE DD K E G GF + A
Sbjct: 45 GPPGSGKGTQLVSDDLVVELIDDNLTKPECQNGWLLDGFPRTVA 88
>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
Length = 2153
Score = 29.9 bits (64), Expect = 1.9
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = +3
Query: 18 PSKDQGSYDGPPGMDPGTLDTD--WDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 191
PS + G+ + D L D + V + M+LK ++ + +KP + A
Sbjct: 1228 PSDEVGTLESTQMCDKIYLSQDVKHESVEQMTPSMSLKPDVQT--LSIPSDKPPKVSSSA 1285
Query: 192 IMPCIQGRD-VIAQAQSGTGKTATFSISILQQIDTSIRECQ 311
P + G D +I Q+ GKT SI QQ+DT RE Q
Sbjct: 1286 --PSLMGTDEIICQSLEHAGKTPPALSSISQQLDTR-REIQ 1323
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 162 EKPSAIQQRAIMPCIQGRD-VIAQAQSGTGKTATFSISILQQIDTSIRECQ 311
+KP + A P + G D +I Q++ GKT SI QQ+DT RE Q
Sbjct: 1567 DKPPKVSFSA--PSLMGTDEIICQSREHAGKTPPALSSIPQQLDTG-REIQ 1614
Score = 27.9 bits (59), Expect = 7.9
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Frame = +3
Query: 18 PSKDQGSYDGPPGMDPGTLDTD--WDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 191
PS + G+ + D L D + V + M+LK ++ + +KP + A
Sbjct: 1810 PSDEVGTLESTQKFDEIDLSQDVKHESVEQMTPSMSLKPDVQT--LSIPSDKPPKVSFSA 1867
Query: 192 IMPCIQGRD-VIAQAQSGTGKTATFSISILQQIDT--SIRE 305
P + G D +I Q+ GKT S QQ+DT IRE
Sbjct: 1868 --PSLMGTDEIICQSLEHAGKTPPALSSFSQQLDTRREIRE 1906
>SB_55048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 27
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 435 IRQLESGVHVVVGTPGRVYDMIT 503
I +L+ G ++V TPGR+ DM+T
Sbjct: 1 IAELKRGAEIIVCTPGRMIDMLT 23
>SB_39648| Best HMM Match : DUF1110 (HMM E-Value=1.7)
Length = 472
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +3
Query: 450 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 629
S V ++ G PG V I + +NT + + D D M S D + ++ D
Sbjct: 376 SSVDIIDGNPGHVMSTIATDDVTSNTDDIMIEDNPDNMTSNISTDDVTSNDDIMIEDNPD 435
Query: 630 ILLSATMPDDV 662
+ S DDV
Sbjct: 436 NMTSNIATDDV 446
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 15 GPSKDQG-SYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRG 143
GP +QG S GPPG PG T W+ + N E LRG
Sbjct: 3363 GPKGEQGRSISGPPG-PPGAPGTSWNDSIVNGGLSNSLLESLRG 3405
>SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 512
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 282 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 410
Q D++++E IL ELA++IQK++ LN K AC+
Sbjct: 58 QGDSTLKEPVQKILIIGLELAKEIQKLIDEASSGLNIKHAACL 100
>SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07)
Length = 532
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 204 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE 305
+ G DV+A + SGT K + F ++++ D+ R+
Sbjct: 245 VNGSDVVANSSSGTVKRSLFLPEVMEENDSVFRD 278
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/73 (21%), Positives = 32/73 (43%)
Frame = +3
Query: 129 ELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC 308
E+ + + GF A Q++A+M + G + +G GK+ + + S C
Sbjct: 512 EVYKALGQLGFSSFRAGQEQAVMRILSGMSSLVVLSTGAGKSLCYQLPAYMYHKRS--PC 569
Query: 309 QALILAPTRELAQ 347
L+++P L +
Sbjct: 570 LTLVISPLVSLME 582
>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
Length = 1325
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 435 IRQLESGVHVVVGTPGRVYDMITRRALHA 521
+RQ+ + V TP VYDM TR+ HA
Sbjct: 1129 VRQVNTTAIPRVSTPRHVYDMQTRQLFHA 1157
>SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 398 AFSIQVITKSYHHLLNLLGQLSCGSQDQSLTFTNACID 285
A ++Q +TK+Y HL+N+ G +++ T C D
Sbjct: 201 AHALQTLTKAYRHLMNVTGN---RDKEEKANATEQCAD 235
>SB_26279| Best HMM Match : S-antigen (HMM E-Value=3)
Length = 613
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 516 EAHDELSYHIHDLECPPPHEHHSPVGEYLHGHWC 415
E H L++H H +CP E+H+ + + H C
Sbjct: 89 EYHAMLTFHTHFTQCPDFSEYHAMLPFHTHFTQC 122
>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
Length = 829
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 152 GVYASQQFFFEVHVIEGFDNLIPVGVKC 69
GVY F H + GF N IP +C
Sbjct: 742 GVYLESNVFQNGHALVGFQNTIPASQEC 769
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,076,638
Number of Sequences: 59808
Number of extensions: 533307
Number of successful extensions: 2394
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 2147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2343
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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