Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1111
(666 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 118 4e-29
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 2.0
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 2.0
AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective... 23 2.0
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 2.6
L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein. 23 3.5
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 3.5
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 4.6
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 8.0
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 21 8.0
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 118 bits (285), Expect = 4e-29
Identities = 69/205 (33%), Positives = 116/205 (56%), Gaps = 14/205 (6%)
Frame = +3
Query: 90 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 269
Q +E+F+ L+ +L I G++KP+ +Q+ A+ + GRD++A AQ+G+GKTA F++
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAV 252
Query: 270 SIL-----QQIDTSIR----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 422
I+ + +D + E Q +I++PTREL QI + ++ + K GGT+
Sbjct: 253 PIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTS 312
Query: 423 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI---- 590
V +L +G H++V TPGR+ D + + + ++++ VLDEAD ML GF I
Sbjct: 313 VMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMV 372
Query: 591 -HDVFKMLSADVQVILLSATMPDDV 662
H+ L + Q ++ SAT PD+V
Sbjct: 373 DHETMVPL-GERQTLMFSATFPDEV 396
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.4 bits (48), Expect = 2.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 235 SQELEKLLLSLYRFYNKSIQAFVNV 309
S++ E+L+ L+R YNK I+ N+
Sbjct: 24 SEDEERLVRDLFRGYNKLIRPVQNM 48
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 23.4 bits (48), Expect = 2.0
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = -1
Query: 510 HDELSYHIHDLECPPPHEHHSPVGEYLHGHWCHQCKHGI*HSSDHQELSPPSEFVGPALL 331
++EL++ + CPPP S G G C + H +E PS+ +
Sbjct: 1689 YEELNHCAPNRRCPPPPRMGSAEGLSHRGMEDEICPYATFHLLGFREEMDPSKAMQFQTF 1748
Query: 330 WEPGS 316
PG+
Sbjct: 1749 PHPGN 1753
>AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective
protein-1 protein.
Length = 128
Score = 23.4 bits (48), Expect = 2.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 426 GHWCHQCKHGI*HSS 382
G CH+CK+GI SS
Sbjct: 40 GDSCHKCKYGIAMSS 54
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 23.0 bits (47), Expect = 2.6
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = -1
Query: 516 EAHDELSYHIHDLECPPPHEHHSP 445
+ H L H H L+ +HH P
Sbjct: 139 QRHHHLQNHHHHLQSTAVQDHHRP 162
>L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein.
Length = 382
Score = 22.6 bits (46), Expect = 3.5
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 581 LETSGQHFISFIKNKKFDGVGMKRTTSYHIIY-TTWSA 471
L+ H I+ I +K F GVG+ S+ I+ W++
Sbjct: 120 LQVFRDHLINQIPDKSFPGVGVIDFESWRPIFRQNWAS 157
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 3.5
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Frame = +2
Query: 119 PQRRIVERHIRLWF*KTFC----NPATRNNAL 202
P +++ I WF TFC N AT NA+
Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNAV 552
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.2 bits (45), Expect = 4.6
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = +2
Query: 404 LHWWHQCP 427
LH WH CP
Sbjct: 470 LHHWHHCP 477
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.4 bits (43), Expect = 8.0
Identities = 10/30 (33%), Positives = 10/30 (33%)
Frame = -1
Query: 510 HDELSYHIHDLECPPPHEHHSPVGEYLHGH 421
H H H PH HHS H H
Sbjct: 415 HHHTMGHGHSHIHATPHHHHSHAATPHHQH 444
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 21.4 bits (43), Expect = 8.0
Identities = 7/18 (38%), Positives = 8/18 (44%)
Frame = -1
Query: 471 PPPHEHHSPVGEYLHGHW 418
PP H HH H H+
Sbjct: 349 PPHHHHHHQTQSLQHLHY 366
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,387
Number of Sequences: 438
Number of extensions: 4955
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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