Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1111
(666 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 283 1e-76
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 282 2e-76
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 278 3e-75
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 270 6e-73
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 245 2e-65
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 162 2e-40
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 162 2e-40
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 160 9e-40
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 160 9e-40
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 157 8e-39
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 138 4e-33
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 138 4e-33
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 135 3e-32
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 133 1e-31
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 132 2e-31
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 125 2e-29
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 124 4e-29
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 124 5e-29
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 124 5e-29
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 124 7e-29
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 124 7e-29
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 124 7e-29
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 123 1e-28
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 122 2e-28
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 122 2e-28
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 121 4e-28
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 121 5e-28
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 120 7e-28
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 118 5e-27
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 116 1e-26
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 116 1e-26
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 116 2e-26
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 116 2e-26
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 114 6e-26
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 113 1e-25
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 113 1e-25
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 111 5e-25
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 111 5e-25
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 110 7e-25
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 110 9e-25
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 108 3e-24
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 108 4e-24
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 107 5e-24
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 100 8e-22
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 99 1e-21
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 99 1e-21
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 99 3e-21
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 98 4e-21
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 98 4e-21
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 98 5e-21
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 96 2e-20
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 95 3e-20
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 95 4e-20
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 95 5e-20
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 90 1e-18
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 89 3e-18
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 87 1e-17
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 84 9e-17
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 81 5e-16
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 79 3e-15
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 73 2e-13
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 73 2e-13
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 59 3e-09
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 52 3e-07
At2g28600.1 68415.m03476 expressed protein 41 9e-04
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ... 33 0.23
At3g10020.1 68416.m01202 expressed protein 33 0.23
At2g04620.1 68415.m00470 cation efflux family protein potential ... 33 0.23
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 30 1.2
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 30 1.2
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At4g17920.1 68417.m02670 zinc finger (C3HC4-type RING finger) fa... 29 3.7
At3g49970.1 68416.m05464 phototropic-responsive protein, putativ... 29 3.7
At1g15140.3 68414.m01810 oxidoreductase NAD-binding domain-conta... 29 3.7
At1g15140.2 68414.m01809 oxidoreductase NAD-binding domain-conta... 29 3.7
At1g15140.1 68414.m01808 oxidoreductase NAD-binding domain-conta... 29 3.7
At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase, pu... 28 4.9
At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transfera... 28 6.4
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 28 6.4
At2g43110.1 68415.m05352 expressed protein 28 6.4
At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP ... 27 8.5
At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP ... 27 8.5
At1g76010.1 68414.m08825 expressed protein 27 8.5
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 283 bits (693), Expect = 1e-76
Identities = 134/196 (68%), Positives = 164/196 (83%)
Frame = +3
Query: 78 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 257
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTGKTA
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 258 TFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 437
TF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L K HAC+GGT+VRED
Sbjct: 92 TFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 151
Query: 438 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSA 617
R L++GVHVVVGTPGRV+DM+ R++L A+ IK+FVLDEADEMLSRGFKDQI+D+F++L
Sbjct: 152 RILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPP 211
Query: 618 DVQVILLSATMPDDVL 665
+QV + SATMP + L
Sbjct: 212 KIQVGVFSATMPPEAL 227
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 282 bits (691), Expect = 2e-76
Identities = 133/199 (66%), Positives = 167/199 (83%)
Frame = +3
Query: 69 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTG 248
T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTG
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTG 90
Query: 249 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 428
KTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L K AC+GGT+VR
Sbjct: 91 KTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVR 150
Query: 429 EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKM 608
ED R L+SGVHVVVGTPGRV+D++ R++L A+ IK+FVLDEADEMLSRGFKDQI+D+F++
Sbjct: 151 EDQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQL 210
Query: 609 LSADVQVILLSATMPDDVL 665
L + VQV + SATMP + L
Sbjct: 211 LPSKVQVGVFSATMPPEAL 229
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 278 bits (681), Expect = 3e-75
Identities = 131/196 (66%), Positives = 163/196 (83%)
Frame = +3
Query: 78 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 257
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTGKTA
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 258 TFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 437
TF +LQQ+D ++ +CQAL+LAPTRELAQQI+KV+ ALGD+ K HAC+GGT+VRED
Sbjct: 92 TFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQ 151
Query: 438 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSA 617
R L++GVHVVVGTPGRV+DM+ R++L + IK+FVLDEADEMLSRGFKDQI+D+F++L
Sbjct: 152 RILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPP 211
Query: 618 DVQVILLSATMPDDVL 665
+QV + SATMP + L
Sbjct: 212 KIQVGVFSATMPPEAL 227
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 270 bits (662), Expect = 6e-73
Identities = 126/196 (64%), Positives = 159/196 (81%)
Frame = +3
Query: 78 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 257
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+MP +QGRDVIAQAQSGTGKT+
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTS 87
Query: 258 TFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 437
++S+ Q +DTS RE QALIL+PTRELA Q +K + A+G H N + HACIGG +V EDI
Sbjct: 88 MIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDI 147
Query: 438 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSA 617
R+LE GVHVV GTPGRV DMI RR+L IKL +LDE+DEMLSRGFKDQI+DV++ L
Sbjct: 148 RKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPP 207
Query: 618 DVQVILLSATMPDDVL 665
D+QV L+SAT+P ++L
Sbjct: 208 DLQVCLVSATLPHEIL 223
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 245 bits (599), Expect = 2e-65
Identities = 108/190 (56%), Positives = 151/190 (79%)
Frame = +3
Query: 96 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 275
+++FDDM + +++LRG+Y YG++KPS IQQRA++P ++GRDVIAQAQSGTGKT+ +IS+
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISV 80
Query: 276 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 455
Q ++ S R+ Q L+L+P+RELA Q +K + A+G H N + HACIGG ++ EDI++LE G
Sbjct: 81 CQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERG 140
Query: 456 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 635
VH V GTPGRVYDMI R +L +KL VLDE+DEMLS+G KDQI+DV++ L D+QV L
Sbjct: 141 VHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCL 200
Query: 636 LSATMPDDVL 665
+SAT+P ++L
Sbjct: 201 ISATLPQEIL 210
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 162 bits (394), Expect = 2e-40
Identities = 78/183 (42%), Positives = 116/183 (63%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 284
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I +L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 285 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 464
ID QA+I+ PTRELA Q +V LG HL + GGT++++DI +L VH+
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHL 252
Query: 465 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 644
+VGTPGR+ D+ + + V+DEAD++LS+ F+ + + L Q+++ SA
Sbjct: 253 LVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSA 312
Query: 645 TMP 653
T P
Sbjct: 313 TFP 315
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 162 bits (394), Expect = 2e-40
Identities = 78/183 (42%), Positives = 116/183 (63%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 284
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I +L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 285 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 464
ID QA+I+ PTRELA Q +V LG HL + GGT++++DI +L VH+
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHL 252
Query: 465 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 644
+VGTPGR+ D+ + + V+DEAD++LS+ F+ + + L Q+++ SA
Sbjct: 253 LVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSA 312
Query: 645 TMP 653
T P
Sbjct: 313 TFP 315
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 160 bits (388), Expect = 9e-40
Identities = 77/183 (42%), Positives = 117/183 (63%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 284
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I +L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 285 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 464
ID + QA+IL PTRELA Q +V L +LN + GGT++R+DI +L VH+
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHL 245
Query: 465 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 644
+VGTPGR+ D+ + + V+DEAD++LS F+ + ++ + L + Q ++ SA
Sbjct: 246 LVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSA 305
Query: 645 TMP 653
T P
Sbjct: 306 TFP 308
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 160 bits (388), Expect = 9e-40
Identities = 77/183 (42%), Positives = 117/183 (63%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 284
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I +L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 285 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 464
ID + QA+IL PTRELA Q +V L +LN + GGT++R+DI +L VH+
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHL 245
Query: 465 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 644
+VGTPGR+ D+ + + V+DEAD++LS F+ + ++ + L + Q ++ SA
Sbjct: 246 LVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSA 305
Query: 645 TMP 653
T P
Sbjct: 306 TFP 308
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 157 bits (380), Expect = 8e-39
Identities = 78/183 (42%), Positives = 114/183 (62%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 284
F+D LK +LLRGIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I L++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 285 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 464
ID QA+IL PTRELA Q +V L +L + GGT++R+DI +L VH+
Sbjct: 216 IDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHL 275
Query: 465 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 644
+VGTPGR+ D+ + + V+DEAD++LS F+ I ++ + L Q+++ SA
Sbjct: 276 LVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSA 335
Query: 645 TMP 653
T P
Sbjct: 336 TFP 338
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 138 bits (333), Expect = 4e-33
Identities = 80/190 (42%), Positives = 110/190 (57%), Gaps = 4/190 (2%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 284
F D LK ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 285 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVR--EDIRQLESG 455
I+ S + AL+L TRELA QI + +L + K GG N++ +D+ + E
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNEC- 166
Query: 456 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVI 632
H+VVGTPGRV + + L ++ F+LDE D+ML S + + ++FKM D QV+
Sbjct: 167 PHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
Query: 633 LLSATMPDDV 662
+ SAT+ ++
Sbjct: 227 MFSATLSKEI 236
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 138 bits (333), Expect = 4e-33
Identities = 80/190 (42%), Positives = 110/190 (57%), Gaps = 4/190 (2%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 284
F D LK ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 285 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVR--EDIRQLESG 455
I+ S + AL+L TRELA QI + +L + K GG N++ +D+ + E
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNEC- 166
Query: 456 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVI 632
H+VVGTPGRV + + L ++ F+LDE D+ML S + + ++FKM D QV+
Sbjct: 167 PHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
Query: 633 LLSATMPDDV 662
+ SAT+ ++
Sbjct: 227 MFSATLSKEI 236
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 135 bits (326), Expect = 3e-32
Identities = 71/187 (37%), Positives = 112/187 (59%), Gaps = 6/187 (3%)
Frame = +3
Query: 111 DMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI- 287
D+ + E+++ + G EK IQ+ + P ++GRD+I +A++GTGKT F I I+ +I
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 288 -----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 452
+ Q L+LAPTRELA+Q++K L+ C GGT + + +R+L
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRELNY 237
Query: 453 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVI 632
G+ V VGTPGR+ D++ R AL+ + ++ VLDEAD+ML GF + + + + L A Q +
Sbjct: 238 GIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSM 297
Query: 633 LLSATMP 653
+ SATMP
Sbjct: 298 MFSATMP 304
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 133 bits (321), Expect = 1e-31
Identities = 72/187 (38%), Positives = 112/187 (59%), Gaps = 6/187 (3%)
Frame = +3
Query: 111 DMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI- 287
++ + E+++ + + G EK IQ+ + P ++GRD+I +A++GTGKT F I I+ +I
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 167
Query: 288 -----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 452
R L+LAPTRELA+Q++K L+ C GGT + + +RQL+
Sbjct: 168 KYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRQLDY 225
Query: 453 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVI 632
GV V VGTPGRV D++ R AL+ + ++ VLDEAD+ML GF + + + + L Q +
Sbjct: 226 GVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSM 285
Query: 633 LLSATMP 653
+ SATMP
Sbjct: 286 MFSATMP 292
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 132 bits (319), Expect = 2e-31
Identities = 72/197 (36%), Positives = 114/197 (57%), Gaps = 8/197 (4%)
Frame = +3
Query: 96 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 275
V TF L +LL + G++ P+ IQ +AI + G+ ++A A +G+GKTA+F + I
Sbjct: 109 VLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPI 168
Query: 276 LQQIDT--------SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 431
+ + T R A++LAPTREL Q++ LG L K +GG +
Sbjct: 169 ISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSG 228
Query: 432 DIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 611
+ +++ GV +++GTPGRV D++++ + + I FVLDE D ML RGF+DQ+ +F+ L
Sbjct: 229 QLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL 288
Query: 612 SADVQVILLSATMPDDV 662
S QV+L SAT+ +V
Sbjct: 289 S-QPQVLLFSATISREV 304
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 125 bits (302), Expect = 2e-29
Identities = 70/196 (35%), Positives = 106/196 (54%), Gaps = 5/196 (2%)
Frame = +3
Query: 81 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 260
D + V+TF+D +++ I +EKP+AIQ +A+ + GRDVI A++G+GKTA
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAA 281
Query: 261 FSISILQQI--DTSIRECQA---LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 425
F + ++ I ++ + +I APTRELA QI + A GG +
Sbjct: 282 FVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSK 341
Query: 426 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK 605
E ++L++G +VV TPGR+ DM+ +AL VLDEAD M GF+ Q+ +
Sbjct: 342 HEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVG 401
Query: 606 MLSADVQVILLSATMP 653
+ D Q +L SATMP
Sbjct: 402 QIRPDRQTLLFSATMP 417
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 124 bits (300), Expect = 4e-29
Identities = 69/192 (35%), Positives = 109/192 (56%), Gaps = 4/192 (2%)
Frame = +3
Query: 99 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 278
+TF ++NL LLR G++KP+ IQ I + GRD+ A A +G+GKTA F++ L
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTL 226
Query: 279 QQI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 449
+++ + + LIL PTRELA QI ++ L + KC +GG +VRE L
Sbjct: 227 ERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLR 286
Query: 450 SGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 626
S +VV TPGR+ D + ++ + + + +LDEAD +L GF +I ++ ++ Q
Sbjct: 287 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQ 346
Query: 627 VILLSATMPDDV 662
+L SATM ++V
Sbjct: 347 TMLFSATMTEEV 358
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 124 bits (299), Expect = 5e-29
Identities = 71/190 (37%), Positives = 110/190 (57%), Gaps = 10/190 (5%)
Frame = +3
Query: 114 MNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID- 290
++L + L + G IQ+ ++P +QGRD+IA+A++GTGKT F I I++++
Sbjct: 107 LSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTE 166
Query: 291 -----TSIREC----QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 443
T+ R + L+LAPTRELA+Q++K + +L+ C GG +
Sbjct: 167 EAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVC--VYGGVSYTIQQSA 224
Query: 444 LESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV 623
L GV VVVGTPGR+ D+I R+L ++ VLDEAD+ML+ GF++ + + + L
Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR 284
Query: 624 QVILLSATMP 653
Q +L SATMP
Sbjct: 285 QSMLFSATMP 294
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 124 bits (299), Expect = 5e-29
Identities = 61/186 (32%), Positives = 108/186 (58%), Gaps = 3/186 (1%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 284
F+ +NL + I G++ P+ IQ++ + + G DV+A A++G+GKTA F I +L++
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 285 IDTSIRE--CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 458
+ + + +ALIL+PTR+LA+Q K LG + + +GG ++ + +L G
Sbjct: 90 LKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGP 149
Query: 459 HVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 635
V++ TPGR+ +++ + T++ V DEAD + GF +Q+H + LS + Q +L
Sbjct: 150 DVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLL 209
Query: 636 LSATMP 653
SAT+P
Sbjct: 210 FSATLP 215
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 124 bits (298), Expect = 7e-29
Identities = 71/191 (37%), Positives = 102/191 (53%), Gaps = 4/191 (2%)
Frame = +3
Query: 102 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 272
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 273 ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 449
LQ+I R L+L+PTRELA QIQ+ + G C GG +R LE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 450 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 629
G +VV TPGR+ D++ R + I VLDEAD ML GF+ QI + K + Q
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQT 338
Query: 630 ILLSATMPDDV 662
++ +AT P V
Sbjct: 339 LMYTATWPKGV 349
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 124 bits (298), Expect = 7e-29
Identities = 71/191 (37%), Positives = 102/191 (53%), Gaps = 4/191 (2%)
Frame = +3
Query: 102 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 272
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 273 ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 449
LQ+I R L+L+PTRELA QIQ+ + G C GG +R LE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 450 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 629
G +VV TPGR+ D++ R + I VLDEAD ML GF+ QI + K + Q
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQT 338
Query: 630 ILLSATMPDDV 662
++ +AT P V
Sbjct: 339 LMYTATWPKGV 349
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 124 bits (298), Expect = 7e-29
Identities = 71/191 (37%), Positives = 102/191 (53%), Gaps = 4/191 (2%)
Frame = +3
Query: 102 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 272
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 273 ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 449
LQ+I R L+L+PTRELA QIQ+ + G C GG +R LE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 450 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 629
G +VV TPGR+ D++ R + I VLDEAD ML GF+ QI + K + Q
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQT 338
Query: 630 ILLSATMPDDV 662
++ +AT P V
Sbjct: 339 LMYTATWPKGV 349
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 123 bits (296), Expect = 1e-28
Identities = 69/205 (33%), Positives = 116/205 (56%), Gaps = 13/205 (6%)
Frame = +3
Query: 87 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS 266
++VV+TF ++ ++EEL++ G++ PS IQ A+ ++G+DVI AQ+G+GKT F+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFA 64
Query: 267 ISILQQIDTSIRECQ------------ALILAPTRELAQQIQKVVIALGDHLNAKCHACI 410
I ILQ + + + + A +L+PTRELA QI + ALG ++ +C +
Sbjct: 65 IPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLV 124
Query: 411 GGTNVREDIRQLESGVHVVVGTPGRVYD-MITRRALHANTIKLFVLDEADEMLSRGFKDQ 587
GG + + L HV+V TPGR++D M + ++K VLDEAD +L+ F+
Sbjct: 125 GGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKS 184
Query: 588 IHDVFKMLSADVQVILLSATMPDDV 662
++ + + + + + L SATM V
Sbjct: 185 LNQILEEIPLERKTFLFSATMTKKV 209
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 122 bits (295), Expect = 2e-28
Identities = 71/199 (35%), Positives = 102/199 (51%), Gaps = 5/199 (2%)
Frame = +3
Query: 81 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 260
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++G+GKT
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 261 FSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 425
+ + L + R Q LILAPTRELA QIQ+ G + GG
Sbjct: 219 YLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPK 278
Query: 426 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK 605
IR L GV +V+ TPGR+ DM+ + + + VLDEAD ML GF+ QI +
Sbjct: 279 GPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVS 338
Query: 606 MLSADVQVILLSATMPDDV 662
+ D Q +L SAT P +V
Sbjct: 339 QIRPDRQTLLWSATWPREV 357
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 122 bits (295), Expect = 2e-28
Identities = 71/199 (35%), Positives = 102/199 (51%), Gaps = 5/199 (2%)
Frame = +3
Query: 81 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 260
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++G+GKT
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 261 FSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 425
+ + L + R Q LILAPTRELA QIQ+ G + GG
Sbjct: 219 YLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPK 278
Query: 426 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK 605
IR L GV +V+ TPGR+ DM+ + + + VLDEAD ML GF+ QI +
Sbjct: 279 GPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVS 338
Query: 606 MLSADVQVILLSATMPDDV 662
+ D Q +L SAT P +V
Sbjct: 339 QIRPDRQTLLWSATWPREV 357
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 121 bits (292), Expect = 4e-28
Identities = 68/191 (35%), Positives = 101/191 (52%), Gaps = 4/191 (2%)
Frame = +3
Query: 102 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 272
TF+ L E+LR + + GF P+ IQ + +Q RD++A A++G+GKT + I
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
Query: 273 ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 449
+L+ R LILAPTRELA QIQ + G C GG +++LE
Sbjct: 496 LLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELE 555
Query: 450 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 629
G +VV TPGR+ D++ + + + L VLDEAD ML GF+ QI + + Q
Sbjct: 556 RGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQT 615
Query: 630 ILLSATMPDDV 662
++ +AT P +V
Sbjct: 616 LMYTATWPKEV 626
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 121 bits (291), Expect = 5e-28
Identities = 75/214 (35%), Positives = 114/214 (53%), Gaps = 17/214 (7%)
Frame = +3
Query: 72 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSG 242
++T D V V TF +++L E L I + KP+ +Q+ AI ++GRD++A AQ+G
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 243 TGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNA 392
+GKTA F I+ I D ++ + A+IL+PTRELA QI
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGV 266
Query: 393 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 572
K GGT + + +R+LE GV ++V TPGR+ D++ R + I+ LDEAD ML
Sbjct: 267 KVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDM 326
Query: 573 GFKDQIHDVFKMLSADV----QVILLSATMPDDV 662
GF+ QI + + + Q +L SAT P ++
Sbjct: 327 GFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREI 360
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 120 bits (290), Expect = 7e-28
Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 4/190 (2%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 284
F+ + L E + G KP+ +Q + + GRDV+ AQ+G+GKTA F++ IL +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 285 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 464
+ AL++ PTRELA Q+ + ALG LN +C +GG ++ L S H+
Sbjct: 120 LAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHI 179
Query: 465 VVGTPGRVYDMITRR----ALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVI 632
V+ TPGR+ ++ + + T K VLDEAD +L GF+D++ +F+ L Q +
Sbjct: 180 VITTPGRIKVLLENNPDVPPVFSRT-KFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTL 238
Query: 633 LLSATMPDDV 662
L SATM ++
Sbjct: 239 LFSATMTSNL 248
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 118 bits (283), Expect = 5e-27
Identities = 77/214 (35%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Frame = +3
Query: 72 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSG 242
++T D V V TF +++L E L I + KP+ +Q+ AI GRD++A AQ+G
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
Query: 243 TGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNA 392
+GKTA F I+ I D I + A+IL+PTRELA QI
Sbjct: 194 SGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGV 253
Query: 393 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 572
K GGT V + IR+LE GV ++V TPGR+ D++ R + ++ LDEAD ML
Sbjct: 254 KVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDM 313
Query: 573 GFKDQIHDVFKMLSADV----QVILLSATMPDDV 662
GF+ QI + + + Q +L SAT P ++
Sbjct: 314 GFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREI 347
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 116 bits (280), Expect = 1e-26
Identities = 65/199 (32%), Positives = 101/199 (50%), Gaps = 5/199 (2%)
Frame = +3
Query: 81 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 260
D + V++F D+ + +L + GF +P+ IQ + ++GRD+I A++G+GKT +
Sbjct: 93 DIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLS 152
Query: 261 FSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 425
+ + + ++ L+LAPTRELA QIQ+ G K GG
Sbjct: 153 YLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPK 212
Query: 426 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK 605
+R L+ GV +V+ TPGR+ DM+ + + VLDEAD ML GF QI +
Sbjct: 213 GPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVS 272
Query: 606 MLSADVQVILLSATMPDDV 662
+ D Q + SAT P +V
Sbjct: 273 HIRPDRQTLYWSATWPKEV 291
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 116 bits (279), Expect = 1e-26
Identities = 63/176 (35%), Positives = 101/176 (57%), Gaps = 8/176 (4%)
Frame = +3
Query: 96 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 275
+ ++++ L ELL+ + G++KPS IQ AI +Q RDVI A++G+GKTA F + +
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 371
Query: 276 LQQID-----TSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 431
L I + E + A+++APTRELAQQI++ + +L + + +GG ++ E
Sbjct: 372 LAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEE 431
Query: 432 DIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDV 599
++ G +V+ TPGR+ D + RR N VLDEAD M+ GF+ Q+ V
Sbjct: 432 QGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGV 487
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 116 bits (278), Expect = 2e-26
Identities = 64/179 (35%), Positives = 98/179 (54%), Gaps = 4/179 (2%)
Frame = +3
Query: 138 RGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIREC 308
R +Y+ GF PS IQ ++ +Q RD++A A++G+GKT + I LQ+I R
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMG 301
Query: 309 QA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGR 485
L+L+PTRELA QIQ + G C GG ++++E GV +VV TPGR
Sbjct: 302 PTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGR 361
Query: 486 VYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 662
+ D++ + + + + VLDEAD ML GF+ QI + + Q ++ +AT P +V
Sbjct: 362 LNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEV 420
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 116 bits (278), Expect = 2e-26
Identities = 62/167 (37%), Positives = 99/167 (59%), Gaps = 8/167 (4%)
Frame = +3
Query: 186 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTREL 341
+AI + G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 342 AQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHA 521
Q++ LG L K +GG + + +++ GV +++GTPGRV D++++ +
Sbjct: 62 CVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIEL 121
Query: 522 NTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 662
+ I FVLDE D ML RGF+DQ+ +F+ LS QV+L SAT+ +V
Sbjct: 122 DNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFSATISREV 167
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 114 bits (274), Expect = 6e-26
Identities = 69/198 (34%), Positives = 103/198 (52%), Gaps = 9/198 (4%)
Frame = +3
Query: 96 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 275
++TF + NL E +L FEKPS IQ + GRD+I A++G+GKT F I
Sbjct: 115 LKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPA 172
Query: 276 LQQIDTSIREC---------QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 428
+ + ++ L+L+PTRELA QI V+ G+ K GG++
Sbjct: 173 IMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKG 232
Query: 429 EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKM 608
I + SGV +V+GTPGR+ D+I L + + VLDEAD ML GF++ + +
Sbjct: 233 PQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSN 292
Query: 609 LSADVQVILLSATMPDDV 662
+ Q+++ SAT P DV
Sbjct: 293 TNKVRQMVMFSATWPLDV 310
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 113 bits (272), Expect = 1e-25
Identities = 66/200 (33%), Positives = 112/200 (56%), Gaps = 14/200 (7%)
Frame = +3
Query: 96 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 275
++ F DM LLR + G P+ IQ + + + GRD+I A +G+GKT F + +
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPM 155
Query: 276 L-----QQIDTSIRECQ---ALILAPTRELAQQ----IQKVVIALGD--HLNAKCHACIG 413
+ ++I I + AL++ P+RELA+Q +++ V +L + + + CIG
Sbjct: 156 IILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIG 215
Query: 414 GTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIH 593
G ++R + ++ GVH+VV TPGR+ D++ ++ + + +L LDEAD ++ GF+D I
Sbjct: 216 GVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIR 275
Query: 594 DVFKMLSADVQVILLSATMP 653
VF + Q +L SATMP
Sbjct: 276 HVFDHFKSQRQTLLFSATMP 295
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 113 bits (271), Expect = 1e-25
Identities = 71/196 (36%), Positives = 108/196 (55%), Gaps = 10/196 (5%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYA-YGFEKPSAIQQRAIMPCIQG---RDVIAQAQSGTGKTATFSIS 272
F+D+NL EL++G+Y FEKPS IQ ++ P I + +IAQA +G+GKT F +
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQAISL-PMIMTPPHKHLIAQAHNGSGKTTCFVLG 151
Query: 273 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT--NVREDIRQL 446
+L ++D ++RE QAL + PTRELA Q +V+ +G + + R
Sbjct: 152 MLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGA 211
Query: 447 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR-GFKDQIHDVFK---MLS 614
HVV+GTPG + + + L N +K+ V DEAD ML+ GF+D + K ++
Sbjct: 212 PVSAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVN 271
Query: 615 ADVQVILLSATMPDDV 662
+ QV+L SAT + V
Sbjct: 272 PNFQVLLFSATFNETV 287
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 111 bits (266), Expect = 5e-25
Identities = 69/203 (33%), Positives = 104/203 (51%), Gaps = 14/203 (6%)
Frame = +3
Query: 96 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 275
V TF D++L + L I + +P+ +Q+ AI + RD++A AQ+G+GKTA F I
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 276 LQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 425
+ I D + + A+IL+PTRELA QI K GGT +
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 269
Query: 426 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK 605
+ +R+LE G ++V TPGR+ D++ R + I+ LDEAD ML GF+ QI + +
Sbjct: 270 HQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVE 329
Query: 606 MLSADV----QVILLSATMPDDV 662
+ Q +L SAT P +
Sbjct: 330 QMDMPPRGVRQTMLFSATFPSQI 352
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 111 bits (266), Expect = 5e-25
Identities = 69/203 (33%), Positives = 104/203 (51%), Gaps = 14/203 (6%)
Frame = +3
Query: 96 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 275
V TF D++L + L I + +P+ +Q+ AI + RD++A AQ+G+GKTA F I
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 276 LQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 425
+ I D + + A+IL+PTRELA QI K GGT +
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 269
Query: 426 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK 605
+ +R+LE G ++V TPGR+ D++ R + I+ LDEAD ML GF+ QI + +
Sbjct: 270 HQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVE 329
Query: 606 MLSADV----QVILLSATMPDDV 662
+ Q +L SAT P +
Sbjct: 330 QMDMPPRGVRQTMLFSATFPSQI 352
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 110 bits (265), Expect = 7e-25
Identities = 64/203 (31%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Frame = +3
Query: 96 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---- 263
++ F DM +L + G +P+ IQ + + + GRD+I A +G+GKT F
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 204
Query: 264 -SISILQQIDTSIRECQA---LILAPTRELAQQIQKVV------IALGDHLNAKCHACIG 413
I++ +++ I + LI+ P+RELA+Q +VV + + + CIG
Sbjct: 205 IMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIG 264
Query: 414 GTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIH 593
G ++R + ++ GVH+VV TPGR+ DM+ ++ + + + LDEAD ++ GF+D I
Sbjct: 265 GIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIR 324
Query: 594 DVFKMLSADVQVILLSATMPDDV 662
+VF + Q +L SATMP +
Sbjct: 325 EVFDHFKSQRQTLLFSATMPTKI 347
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 110 bits (264), Expect = 9e-25
Identities = 64/192 (33%), Positives = 105/192 (54%), Gaps = 5/192 (2%)
Frame = +3
Query: 102 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SIS 272
TFD ++L E+ I GF+ + IQ +I P ++G+DV+ A++G+GKT F ++
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149
Query: 273 ILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 449
+L + S R +++ PTRELA Q + V L H + IGG N R + +++
Sbjct: 150 LLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIA 209
Query: 450 SGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 626
SG ++V+ TPGR+ D + +A +K V+DEAD +L F++ ++ + K+L Q
Sbjct: 210 SGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQ 269
Query: 627 VILLSATMPDDV 662
L SAT V
Sbjct: 270 TALFSATQTSKV 281
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 108 bits (260), Expect = 3e-24
Identities = 65/202 (32%), Positives = 105/202 (51%), Gaps = 8/202 (3%)
Frame = +3
Query: 81 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 260
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++G+GKT
Sbjct: 523 DVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLG 582
Query: 261 FSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 425
F + +L+ I D E L++APTREL QQI + L +C GG+ V
Sbjct: 583 FVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGV 642
Query: 426 REDIRQLESGVHVVVGTPGRVYDMI---TRRALHANTIKLFVLDEADEMLSRGFKDQIHD 596
+ I +L+ G +VV TPGR+ D++ + + + + V+DEAD M GF+ QI
Sbjct: 643 AQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITR 702
Query: 597 VFKMLSADVQVILLSATMPDDV 662
+ + + + Q +L SAT P V
Sbjct: 703 IIQNIRPERQTVLFSATFPRQV 724
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 108 bits (259), Expect = 4e-24
Identities = 62/153 (40%), Positives = 91/153 (59%), Gaps = 4/153 (2%)
Frame = +3
Query: 216 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 392
DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L +
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 393 KCHACIGGTNVR--EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 566
K GG N++ +D+ + E H+VVGTPGRV + + L ++ F+LDE D+ML
Sbjct: 62 KVSVFYGGVNIKIHKDLLKNEC-PHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 120
Query: 567 -SRGFKDQIHDVFKMLSADVQVILLSATMPDDV 662
S + + ++FKM D QV++ SAT+ ++
Sbjct: 121 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEI 153
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 107 bits (258), Expect = 5e-24
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 8/202 (3%)
Frame = +3
Query: 81 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 260
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++G+GKT
Sbjct: 390 DVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLG 449
Query: 261 FSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 425
F + +L+ I D E L++APTREL QQI + L C GG+ V
Sbjct: 450 FVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGV 509
Query: 426 REDIRQLESGVHVVVGTPGRVYDMI---TRRALHANTIKLFVLDEADEMLSRGFKDQIHD 596
+ I +L+ G +VV TPGR+ D++ + + + + V+DEAD M GF+ QI
Sbjct: 510 AQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITR 569
Query: 597 VFKMLSADVQVILLSATMPDDV 662
+ + + D Q +L SAT P V
Sbjct: 570 IVQNIRPDRQTVLFSATFPRQV 591
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 100 bits (240), Expect = 8e-22
Identities = 65/200 (32%), Positives = 105/200 (52%), Gaps = 14/200 (7%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI----S 272
FD+ + L+ + A G K + +Q + C+ G+D + +A++GTGK+ F + +
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
Query: 273 ILQQIDT-----SIRECQALILAPTRELAQQIQKVVIA-LGDHLNAKCHACIGGTNVRED 434
+L+ +++ + LIL PTRELA QI A L +H IGGT R D
Sbjct: 437 VLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLD 496
Query: 435 IRQLES-GVHVVVGTPGRVYDMITRRA---LHANTIKLFVLDEADEMLSRGFKDQIHDVF 602
++LES +++ TPGR+ D I ++ +KLF++DEAD +L GFK + +
Sbjct: 497 QQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKII 556
Query: 603 KMLSADVQVILLSATMPDDV 662
L Q +L SAT+P +V
Sbjct: 557 DCLPRQRQSLLFSATIPKEV 576
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 99 bits (238), Expect = 1e-21
Identities = 65/199 (32%), Positives = 103/199 (51%), Gaps = 13/199 (6%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 284
FD L L+GI GF+ + +Q+ + +QG+D++A+A++GTGKT F + ++
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 285 I--------DTSIRECQALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGGTNVREDI 437
+ D L++ PTRELA Q + I L H + IGGT + +
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQ 201
Query: 438 RQLE-SGVHVVVGTPGRVYDMITRRALHANT---IKLFVLDEADEMLSRGFKDQIHDVFK 605
R+L+ S ++V TPGR+ D I + A +K+ VLDEAD +L GF+ +I +
Sbjct: 202 RRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIA 261
Query: 606 MLSADVQVILLSATMPDDV 662
+ Q L SAT+ D+V
Sbjct: 262 AVPKQRQTFLFSATVSDEV 280
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 99 bits (238), Expect = 1e-21
Identities = 62/204 (30%), Positives = 113/204 (55%), Gaps = 12/204 (5%)
Frame = +3
Query: 87 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS 266
++ ++F+++ L L+R + G EKP+ IQQ AI ++G+DV+A+A++G+GKT +
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYL 101
Query: 267 ISILQQI---DTSIRE---CQALILAPTRELAQQIQKVVIALGDHLNAKCHAC-IGGTNV 425
+ +LQ++ D+ ++ A IL P+REL QQ+ V +L + + A + +
Sbjct: 102 LPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMS 161
Query: 426 REDIRQLESGV-HVVVGTPGRVYDMITRRALH----ANTIKLFVLDEADEMLSRGFKDQI 590
D+R +G+ ++V TP + L + ++ + VLDEAD +LS G++D +
Sbjct: 162 ASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNL 221
Query: 591 HDVFKMLSADVQVILLSATMPDDV 662
V ++ Q +L+SAT DV
Sbjct: 222 RSVTSIIPRRCQCLLMSATTSSDV 245
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 98.7 bits (235), Expect = 3e-21
Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 5/188 (2%)
Frame = +3
Query: 99 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SI 269
+TF+ ++L + + I GF + + IQ +AI P + G DV+ A++G+GKT F ++
Sbjct: 154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Query: 270 SILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 446
+L ++ + R L++ PTRELA Q V L + + IGG + + L
Sbjct: 214 ELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEIL 273
Query: 447 ESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV 623
GV+++V TPGR+ D + +K V+DEAD +L + F++ + + +L
Sbjct: 274 AKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTR 333
Query: 624 QVILLSAT 647
Q L SAT
Sbjct: 334 QTSLFSAT 341
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain;
identical to cDNA DEAD box RNA helicase, RH26 GI:3776024
Length = 850
Score = 98.3 bits (234), Expect = 4e-21
Identities = 68/220 (30%), Positives = 109/220 (49%), Gaps = 13/220 (5%)
Frame = +3
Query: 42 DGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDV 221
D P G T D+ + FD L L+ I GFE + +Q+ + +QG+DV
Sbjct: 365 DKPTGEHVKTSDSYLSKT--RFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDV 422
Query: 222 IAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ-IQKVVIAL 374
+A+A++GTGKT F + ++ + D+ L++ PTRELA Q + L
Sbjct: 423 LAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLL 482
Query: 375 GDHLNAKCHACIGGTNVREDIRQLESG-VHVVVGTPGRVYDMITRRALHANT---IKLFV 542
H + IGGT + + R++++ ++V TPGR+ D I + A +K+ V
Sbjct: 483 KYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLV 542
Query: 543 LDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 662
LDEAD +L GF+ I + + Q L SAT+P++V
Sbjct: 543 LDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEV 582
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 98.3 bits (234), Expect = 4e-21
Identities = 63/202 (31%), Positives = 108/202 (53%), Gaps = 16/202 (7%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI----S 272
FD+ + L+ + A G K + +Q + C+ G+D + +A++GTGK+ F + +
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 273 ILQQIDT-----SIRECQALILAPTRELAQQIQ---KVVIALGDHLNAKCHACIGGTNVR 428
+L+ +++ + ALIL PTRELA QI K ++ D + + IGGT +
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQ--TLIGGTRFK 447
Query: 429 EDIRQLES-GVHVVVGTPGRVYDMITRRA---LHANTIKLFVLDEADEMLSRGFKDQIHD 596
D ++LES +++ TPGR+ D I ++ +KLF++DEAD +L GF+ +
Sbjct: 448 LDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEK 507
Query: 597 VFKMLSADVQVILLSATMPDDV 662
+ L Q +L SAT+P +V
Sbjct: 508 IIDCLPRQRQSLLFSATIPKEV 529
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 97.9 bits (233), Expect = 5e-21
Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 29/218 (13%)
Frame = +3
Query: 99 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 278
++F+++ L + LL + GF P+ +Q A+ I+G D + Q+ +G+GKT + + IL
Sbjct: 110 KSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL 169
Query: 279 QQI-------------DTSIRECQALILAPTRELAQQI-QKVVIALGDHLNAKCHACIGG 416
+I + E QA+I+AP+REL QI ++V LG +GG
Sbjct: 170 SEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGG 229
Query: 417 TN-VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIH 593
N +R++ ++ +VVGTPGR+ ++ LH + + VLDE DE+LS F++ IH
Sbjct: 230 ANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIH 289
Query: 594 DVFKMLS--------------ADVQVILLSATMPDDVL 665
+ + + A+ Q IL+SAT+P V+
Sbjct: 290 RILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVI 327
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 95.9 bits (228), Expect = 2e-20
Identities = 61/199 (30%), Positives = 102/199 (51%), Gaps = 13/199 (6%)
Frame = +3
Query: 105 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 284
FD L L+ I G+E + +Q+ + ++G+DV+A+A++GTGKT F + ++
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 115
Query: 285 I--------DTSIRECQALILAPTRELAQQ-IQKVVIALGDHLNAKCHACIGGTNVREDI 437
+ D AL++ PTRELA Q + L H + IGGT + +
Sbjct: 116 VVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQ 175
Query: 438 RQLESG-VHVVVGTPGRVYDMITRR---ALHANTIKLFVLDEADEMLSRGFKDQIHDVFK 605
+++++ ++V TPGR+ D I A +K+ VLDEAD +L GF+ I +
Sbjct: 176 KRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIIS 235
Query: 606 MLSADVQVILLSATMPDDV 662
+ + Q L SAT+P++V
Sbjct: 236 AVPKERQTFLFSATVPEEV 254
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 95.5 bits (227), Expect = 3e-20
Identities = 63/180 (35%), Positives = 90/180 (50%), Gaps = 12/180 (6%)
Frame = +3
Query: 150 AYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSI---------- 299
A G E IQ + G D++ +A++G GKT F + IL+ +
Sbjct: 113 ANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYG 172
Query: 300 RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTP 479
R L+L PTRELA+Q+ A G L GG + +L+ GV +VVGTP
Sbjct: 173 RSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTP 232
Query: 480 GRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML--SADVQVILLSATMP 653
GR+ D I R+ L + ++ VLDEADEML GF + + + + S VQ +L SAT+P
Sbjct: 233 GRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLP 292
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 95.1 bits (226), Expect = 4e-20
Identities = 60/190 (31%), Positives = 96/190 (50%), Gaps = 9/190 (4%)
Frame = +3
Query: 120 LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS- 296
L E+++ + GFE + +Q I +DV+ A +G+GKT F + ++ I S
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 297 -----IRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQL-ESG 455
+ +I++PTREL+ QI KV L N +GG V D+ L E G
Sbjct: 83 SYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEG 142
Query: 456 VHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVI 632
++++GTPGR+ DM+ R L +++ +LDEAD +L GF+ Q++ + L +
Sbjct: 143 ANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTG 202
Query: 633 LLSATMPDDV 662
L SAT V
Sbjct: 203 LFSATQTQAV 212
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 94.7 bits (225), Expect = 5e-20
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 9/176 (5%)
Frame = +3
Query: 90 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 269
++VE F ++ L EE++ + E P+ IQ I ++ + V+ + +G+GKT + +
Sbjct: 109 KLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLL 168
Query: 270 SILQQI---------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 422
I+Q + T R + ++L PTREL++Q+ +V ++ H + GG+
Sbjct: 169 PIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSR 228
Query: 423 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 590
+R L + + +VVGTPGR+ I + I VLDEAD M RGF +I
Sbjct: 229 IRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEI 284
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 90.2 bits (214), Expect = 1e-18
Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 9/211 (4%)
Frame = +3
Query: 57 MDPGTLDTDWDQVVETFDDMN--LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQ 230
MD +T ++ F ++ L E+++ + GFE + +Q I +DV+
Sbjct: 1 MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVD 60
Query: 231 AQSGTGKTATFSISILQQIDTS------IRECQALILAPTRELAQQIQKVVIALGDHLNA 392
A +G+GKT F + ++ I S + +I++PTREL+ QI KV A+ A
Sbjct: 61 AATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDF-A 119
Query: 393 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLS 569
KC N E E G ++++GTPGR+ DM+ R L +++ +LDEAD +L
Sbjct: 120 KCREVEADMNTLE-----EEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLD 174
Query: 570 RGFKDQIHDVFKMLSADVQVILLSATMPDDV 662
GF+ Q++ + L + L SAT V
Sbjct: 175 MGFQKQVNYIISRLPKQRRTGLFSATQTQAV 205
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 88.6 bits (210), Expect = 3e-18
Identities = 62/216 (28%), Positives = 109/216 (50%), Gaps = 24/216 (11%)
Frame = +3
Query: 36 SYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI-MPCIQG 212
S DG ++ + + + M L L++ IY F++P+ IQ+ + QG
Sbjct: 169 SCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQG 228
Query: 213 RDVIAQAQSGTGKTATFSISILQQI-DTSIR----------ECQ---------ALILAPT 332
+DVI A++G+GKT F + ILQ++ D + E Q ALI+ PT
Sbjct: 229 KDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPT 288
Query: 333 RELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMIT--- 503
RELA Q+ + + +L+ K +GG + R+L+ +VV TPGR++++++
Sbjct: 289 RELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGE 348
Query: 504 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 611
+ + +++ FVLDEAD M+ RG ++ + +L
Sbjct: 349 KHLVELHSLSFFVLDEADRMVERGHFRELQSILDLL 384
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 86.6 bits (205), Expect = 1e-17
Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 11/197 (5%)
Frame = +3
Query: 105 FDDMN--LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 278
F D+ L +++ + FE + +Q I +DV A +G+GKT F + ++
Sbjct: 16 FSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
Query: 279 QQIDTSI------RECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDI 437
+ + S + +I++PTREL+ QI V L N +GG V+ D+
Sbjct: 76 EILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADM 135
Query: 438 RQLES-GVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 611
+ +E G +V++GTPGR+ D++ R L +++ +LDEAD +L GF+ Q++ + L
Sbjct: 136 KIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRL 195
Query: 612 SADVQVILLSATMPDDV 662
+ L SAT + V
Sbjct: 196 PKQRRTGLFSATQTEGV 212
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 83.8 bits (198), Expect = 9e-17
Identities = 50/199 (25%), Positives = 97/199 (48%), Gaps = 11/199 (5%)
Frame = +3
Query: 99 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 278
+TF ++ E++++ + F++P+ IQ A P I G+ I QSG+GKT + + ++
Sbjct: 374 KTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
Query: 279 QQI--------DTSIREC-QALILAPTRELAQQIQKVVIALG-DHLNAKCHACIGGTNVR 428
Q++ S C + ++L PT ELA Q+ ++ + + GG R
Sbjct: 434 QRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQR 493
Query: 429 EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRG-FKDQIHDVFK 605
+ LE GV V++ TPGR ++ L + ++ +LDE D + F+ + ++
Sbjct: 494 TQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLIN 553
Query: 606 MLSADVQVILLSATMPDDV 662
Q + ++AT+P ++
Sbjct: 554 SSPVTAQYLFVTATLPLEI 572
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 81.4 bits (192), Expect = 5e-16
Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 9/163 (5%)
Frame = +3
Query: 156 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------AL 317
GFE P+ +Q +AI + GRDV+ A +GTGKT + ++ + + AL
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFAL 108
Query: 318 ILAPTRELAQQIQKVVIALGDHLNAKCHACI-GGTNVREDIRQLESGVHVVVGTPGRVYD 494
++ PTREL Q+ + + L + + GG ++ +L G+ +++ TPGR+ D
Sbjct: 109 VIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLD 168
Query: 495 MITRRA--LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSA 617
+ A +H N ++ + DEAD +L G+ +I + K+L +
Sbjct: 169 HLKNTASFVHKN-LRWVIFDEADSILELGYGKEIEQIIKLLGS 210
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 78.6 bits (185), Expect = 3e-15
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 5/194 (2%)
Frame = +3
Query: 96 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 275
V F + + ++ RG+ + + +Q AI + GRD++ A++G+GKT F I I
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 276 LQQIDTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 443
L+++ + +I++PTRELA Q V+ +G IGG + ++
Sbjct: 130 LEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKE 189
Query: 444 LESGVHVVVGTPGRVYD-MITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSAD 620
++++V PGR+ M +++ +LDEAD +L FK Q+ + L
Sbjct: 190 RVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKH 249
Query: 621 VQVILLSATMPDDV 662
Q +L SAT V
Sbjct: 250 RQTLLFSATQTKKV 263
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 72.9 bits (171), Expect = 2e-13
Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 11/187 (5%)
Frame = +3
Query: 126 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE 305
E +L + GF P+ IQ+ A+ GRD I AQ+G+GKT T+ + I I+
Sbjct: 85 EHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSS 144
Query: 306 CQALILAPTRELAQQIQKV--VIALGDHLNAK-C--HACIGGTNVREDIRQLES-GVHVV 467
QA+I+ PTREL Q+ KV ++A ++ K C A + G +R L++ ++
Sbjct: 145 VQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAIL 204
Query: 468 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML----SADV-QVI 632
V T + M+ + +++++ V+DE D + Q+ V K+L S D Q +
Sbjct: 205 VATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYS--SKQVGSVRKLLTSFSSCDKRQTV 262
Query: 633 LLSATMP 653
SA++P
Sbjct: 263 FASASIP 269
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 72.5 bits (170), Expect = 2e-13
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 2/179 (1%)
Frame = +3
Query: 132 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID-TSIREC 308
+LR + GF++P+ IQ++AI + GR+ A A +G+GKT F +L ++ S
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGI 211
Query: 309 QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRV 488
+A+IL+P RELA Q + L N D +L V++ TP R+
Sbjct: 212 RAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKTADFSKL--WCDVLISTPMRL 269
Query: 489 YDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS-ADVQVILLSATMPDDV 662
I + + + ++ VLDE+D++ + QI V K S + L SAT+PD V
Sbjct: 270 KRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSV 328
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 58.8 bits (136), Expect = 3e-09
Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 23/168 (13%)
Frame = +3
Query: 174 AIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQ 350
A+ I P RD+ + +G+GKT ++++ I+Q + +R +AL++ PTR+LA Q
Sbjct: 50 AVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQ 109
Query: 351 IQKVVIALGDHLNAKCHACIGGTNVREDIRQ---------------------LESGVHVV 467
++ V A+ + + +G +++ +I Q LES V ++
Sbjct: 110 VKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDIL 169
Query: 468 VGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKM 608
V TPGR+ D I + ++ V+DE D +L ++ + V ++
Sbjct: 170 VATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQL 217
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 52.4 bits (120), Expect = 3e-07
Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 21/203 (10%)
Frame = +3
Query: 75 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKT 254
DT + ++ + L + + + GF++PS Q I + G+DVI A++G+GKT
Sbjct: 72 DTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKT 131
Query: 255 ATFSISILQQIDTSIRECQ--------------ALILAPTRELAQQIQKVVIALGDHLN- 389
+ I+ Q+ + + + +LIL P L +Q+ ++V L D
Sbjct: 132 HGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGN 191
Query: 390 --AKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI----TRRALHANTIKLFVLDE 551
+ A G + + ++V TP + + I RR +K V DE
Sbjct: 192 PLLRVEAVCGSQGWPDRLPD------IIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDE 245
Query: 552 ADEMLSRGFKDQIHDVFKMLSAD 620
AD +L F++QI + ML D
Sbjct: 246 ADMLLCGSFQNQIIRLINMLRFD 268
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 40.7 bits (91), Expect = 9e-04
Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Frame = +3
Query: 315 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES-GVHVVVGTPGRVY 491
L L P++ A Q++ V AL + + G + I L+S +V TP R+
Sbjct: 200 LYLVPSQSKASQVRSVCKALKG-IGIHTVSLHQGAPLDHQISGLKSVEPEFIVATPERLL 258
Query: 492 DMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVL 665
+++T + + + + L V+DE + S G+ + + + + +S+ Q I+ + + ++
Sbjct: 259 EIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNNSFSASII 316
>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 713
Score = 32.7 bits (71), Expect = 0.23
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 14/189 (7%)
Frame = +3
Query: 123 KEELLRGI-YAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSI 299
KE L++ + + +G Q AI + GRD +G GK SI QI
Sbjct: 21 KEALVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGK------SICYQIPALA 74
Query: 300 RECQALILAPTRELAQQIQKVVIALGDH-LNAKCHACIGGTNVREDIRQ-LESG---VHV 464
+ L+++P L ++ V+AL + + A+ + T+V+ I + L+SG V +
Sbjct: 75 KPGIVLVVSP---LIALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRL 131
Query: 465 VVGTPGRVYD---MITRRALHA-NTIKLFVLDEADEMLSRG--FKDQIHDVFKMLS--AD 620
+ TP + M+ R LH+ + L +DEA + S G F+ + + AD
Sbjct: 132 LYVTPELIATKGFMLKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLAD 191
Query: 621 VQVILLSAT 647
V V+ L+AT
Sbjct: 192 VPVLALTAT 200
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 15 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 188
GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ + +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140
Query: 189 AIMPCIQGR 215
+ P + GR
Sbjct: 141 EVDPRLVGR 149
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -1
Query: 519 HEAHDELSYHIHDLECPPPHEHHSPVGEYLHGHWCHQCKHGI*HSSDHQ 373
H+ H H H+ EC H+H H H +C H H SDHQ
Sbjct: 597 HDHHHHSHSHKHE-ECNHNHDHE----HQSHSHNHEECNHNHDHHSDHQ 640
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = -1
Query: 519 HEAHDELS-YHIHDLECPPPHEHHSPVGEYLHGHWCHQCKHGI*HSSDHQELS 364
HE H + S H H+ H HHS H H +C H H +HQ S
Sbjct: 579 HEEHHQHSDSHKHEEHHEHDHHHHS------HSHKHEECNHN--HDHEHQSHS 623
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +3
Query: 264 SISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 416
+++ L+++ +++EC +A+ + P+ A Q++ + + LG+ NA+ H C G
Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +3
Query: 153 YGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 332
+G K A Q+ I + GRDV+ +G GK S+ Q+ +R L+++P
Sbjct: 85 FGISKYRANQKEIINAIMTGRDVLVIMAAGGGK------SLCYQLPAMLRGGTTLVVSPL 138
Query: 333 RELAQQIQKVVIALG 377
L Q + ALG
Sbjct: 139 LSLIQDQVMGLAALG 153
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 315 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 419
LILA T + + K ++ LG ++NA C GGT
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80
>At4g17920.1 68417.m02670 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 289
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -1
Query: 573 LWTTFHQLHQEQKV*WCWHEAHDELSYHIHDLECPPPHEHHSP 445
L T +H HQE W E+H DL+ PPP E+ P
Sbjct: 126 LTTCYHVFHQECID--LWFESHRTCPVCRRDLDPPPPPENTKP 166
>At3g49970.1 68416.m05464 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 526
Score = 28.7 bits (61), Expect = 3.7
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = -2
Query: 221 NIASLDARHYCALLDCRRFFKTIGVYASQQFFFE 120
NI+ ++ + C+L+DC++ + + +A+Q F+
Sbjct: 373 NISEVEKKKVCSLMDCKKLSRDVYAHAAQNDRFQ 406
>At1g15140.3 68414.m01810 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 271
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 619 SADNILKTSWIWSLKPLDNISSASSRTKSLMVLA*SARRVIISYTRPG 476
SA + + + +W+ PL I SA+ + + +A ++ SYTRPG
Sbjct: 47 SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94
>At1g15140.2 68414.m01809 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 271
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 619 SADNILKTSWIWSLKPLDNISSASSRTKSLMVLA*SARRVIISYTRPG 476
SA + + + +W+ PL I SA+ + + +A ++ SYTRPG
Sbjct: 47 SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94
>At1g15140.1 68414.m01808 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 295
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 619 SADNILKTSWIWSLKPLDNISSASSRTKSLMVLA*SARRVIISYTRPG 476
SA + + + +W+ PL I SA+ + + +A ++ SYTRPG
Sbjct: 47 SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94
>At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase,
putative strong similarity to cytosine-5
methyltransferase (METII) [Arabidopsis thaliana]
GI:6523846; contains Pfam profiles PF01426: BAH domain,
PF00145: C-5 cytosine-specific DNA methylase
Length = 1512
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 360 VVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVG 473
V+++L DH ++K H + +R D QL H+V G
Sbjct: 250 VLVSLRDHESSKIHKALSNVALRIDESQLVKSDHLVDG 287
>At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase ;similar
to UDP-glucose:anthocyanin 5-O-glucosyltransferase
GI:4115563 from [Verbena x hybrida]
Length = 456
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 497 HIIYTTWSAHHHMNTTLQLANIFTDIGAT 411
H + T+ A H+N LQLAN GAT
Sbjct: 13 HYLLVTFPAQGHINPALQLANRLIHHGAT 41
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +3
Query: 282 QIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 416
+++ +++EC +A+ P+ A Q++ + + LG+ NA+ H C+ G
Sbjct: 260 RLEEAVKECLEAVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSG 306
>At2g43110.1 68415.m05352 expressed protein
Length = 288
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 423 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLD 548
V E + L+ V++ GTP R+ ++ AL + + + V+D
Sbjct: 191 VEEQVSLLKKRVNIGSGTPNRIKKLVDIEALGLSRLDMIVID 232
>At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 117 NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 209
NL EE L ++ Y F+ P A ++ C++
Sbjct: 22 NLTEEELARVHEYNFDHPDAFDTEHLLSCME 52
>At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 117 NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 209
NL EE L ++ Y F+ P A ++ C++
Sbjct: 22 NLTEEELARVHEYNFDHPDAFDTEHLLSCME 52
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 12 NGPSKDQGSYDGPPGMDPG 68
+GPS+ +G YDGP G G
Sbjct: 299 DGPSQGRGGYDGPQGRGRG 317
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,137,792
Number of Sequences: 28952
Number of extensions: 369603
Number of successful extensions: 1268
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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