Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1110
(482 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 30 0.16
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 0.37
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 29 0.37
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 29 0.49
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 0.64
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 2.0
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 26 3.4
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 4.5
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 25 7.9
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 7.9
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch... 25 7.9
SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac... 25 7.9
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 30.3 bits (65), Expect = 0.16
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 375 NFLRYSLLPTASTRERGRLEVRSALGTVHVICTVVDRFV 259
NF ++P STR+R + +R G +H+IC D +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 29.1 bits (62), Expect = 0.37
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 188 ATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSL 337
A+ L +++ T+ + P +T ET ++ S+ T T+ + TSS P+SL
Sbjct: 234 ASTLESSSLTNTVSPTESTFYETKSSTSSVP--TQTIDSSSFTSSTPVSL 281
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 29.1 bits (62), Expect = 0.37
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +2
Query: 158 PTTDPRGQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSL 337
P+T T T+ T+ +P TT+L T T T H+ T T+ + +
Sbjct: 73 PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTT 132
Query: 338 VL 343
V+
Sbjct: 133 VV 134
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 28.7 bits (61), Expect = 0.49
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 161 TTDPRGQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLS 334
TT P + T T ++ T T + +TTT+ + T + T T P + T+ LP++
Sbjct: 99 TTIPTVETTTTPMVETT-TITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMA 155
Score = 25.0 bits (52), Expect = 6.0
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +2
Query: 161 TTDPRGQETATNLLTTARTSLILPK---TTTLMETATNLSTTVHITWTVPKADLTSSLPL 331
TT E T + T+ ILP TT ++ET T TV T T P + T+ P+
Sbjct: 64 TTITTPMEETTTITPMVETTTILPMAAMTTPMVETTT--IPTVETT-TTPMVETTTITPM 120
Score = 25.0 bits (52), Expect = 6.0
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 179 QETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLS 334
+ET T L A T+ + TTT T TV T T P + + LP++
Sbjct: 146 EETTTILPMAAMTTPMEETTTTTPMVETTTIPTVE-TMTTPMVEAMTILPMA 196
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 28.3 bits (60), Expect = 0.64
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +1
Query: 235 DYNPNG-NGYEPIDNGAYYVDRPQG---RPYFKPTPFPG 339
DYN N N Y PI N Y+++ G PYF PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 2.0
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +3
Query: 261 RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 368
R + ++C R P RP + PW + + K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 232 KDYNPNGNGYEPIDNGAYYVDRPQGRP 312
K Y +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 4.5
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Frame = +2
Query: 158 PTTDPRGQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTV-PKADLTSSL--- 325
PTT G +TT + T T TAT + TT T T + +T++
Sbjct: 1334 PTTGATGTAGTETQVTTGTETQATTATETQATTATEVQTTTGATGTAGTETQVTTATEVQ 1393
Query: 326 PLSLVLAVGSKEYLRKLIT 382
P + V S Y +++
Sbjct: 1394 PTTAVTETSSSGYYTTIVS 1412
Score = 25.0 bits (52), Expect = 6.0
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +2
Query: 158 PTTDPRGQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWT 295
PTT G +TT + T T TAT + TT T T
Sbjct: 1170 PTTGATGTAGTETQVTTGTETQATTATETQATTATEVQTTTGATGT 1215
Score = 25.0 bits (52), Expect = 6.0
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +2
Query: 158 PTTDPRGQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWT 295
PTT G +TT + T T TAT + TT T T
Sbjct: 1252 PTTGATGTAGTETQVTTGTETQATTATETQATTATEVQTTTGATGT 1297
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 24.6 bits (51), Expect = 7.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 84 RIRVRDENLSVGHSQQSEDENHEEFH 7
R+R RD N S S++S + + FH
Sbjct: 597 RLRTRDSNPSNTDSRESNHKKYNHFH 622
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 24.6 bits (51), Expect = 7.9
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = -3
Query: 240 VVFG--RINDVRAVVNRFVAVSW 178
V+FG R+ DV +N+FV V W
Sbjct: 64 VLFGFLRVKDVNTGLNKFVLVCW 86
>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 209
Score = 24.6 bits (51), Expect = 7.9
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -3
Query: 186 VSWPLGSVVGTVYVRWSSTYWHVSGLTDYGPRKARIRVRDENLSVGHSQQS 34
++ P V+ T+Y R+ S H+ + G + + I RD+ L +G +S
Sbjct: 30 INVPTTHVLQTLYTRFWSFKAHLGVDMELGIKGSLIHYRDDKLFLGEYPKS 80
>SPAC6F12.04 |||COPI-coated vesicle associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 24.6 bits (51), Expect = 7.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 123 HVSGLTDYGPRKARIRVRDENL 58
+V+GL DY PR R D+N+
Sbjct: 108 YVAGLQDYAPRSMRDNDWDDNV 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,323
Number of Sequences: 5004
Number of extensions: 44316
Number of successful extensions: 147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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