Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1110
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0471 + 34169562-34169892,34170121-34170347                       36   0.023
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           31   0.64 
01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077     28   3.4  
08_02_1289 - 25923916-25924586,25925148-25926630                       27   6.0  
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676...    27   6.0  
02_01_0008 - 50576-50671,50767-50829,50918-50961,51048-51129,522...    27   6.0  
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    27   7.9  

>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 35.5 bits (78), Expect = 0.023
 Identities = 28/95 (29%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
 Frame = +1

Query: 70  SNPDPGFSRPV-IGQPGYVPISTG----PAYVXXXXXXXXXXXXGYEPIDNRPYIVNPPK 234
           SN D GF      G PG  P+  G    P                Y P    P    PP 
Sbjct: 11  SNADKGFHGAYPSGYPGAYPLMQGYPNSPGQYPTPGGYPSAPPGQYPPAGGYPGAQYPPS 70

Query: 235 DYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 339
            Y P+  GY P   GAY       +P + P  +PG
Sbjct: 71  GYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +1

Query: 190 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFKPTPFPGARG 348
           Y P  + P  V PP  Y P  +G  P     N + Y + P GRP   P P  GA G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGAGG 448


>01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077
          Length = 247

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
 Frame = -3

Query: 387 YFVINFLRYSLLPTASTRERGRLEVRSALGTVHVICTVVDRFVAVSIRVVVFGRINDVRA 208
           YF I F+ + + PT  +  + + +    L    V+C+ ++  V   +R +++G   DV+A
Sbjct: 80  YFFIYFIGHGVFPTVHSLMKSKKDFPKVLLISSVLCS-LNYAVTTLLRYLIYG--EDVQA 136

Query: 207 VVNRFVAVSWPLGSVVGTVYVRWSSTYWHVSGLTDYGPRKARI-RVRDENLSVGHSQQSE 31
            V         L    G +Y R +     +S L  YG     I  V  E LS+  +  ++
Sbjct: 137 QVT--------LNLPSGKLYTRITILTTLISLLEKYGLEIQLIATVIKEKLSLTTAAATD 188

Query: 30  DENHEE 13
            EN+ +
Sbjct: 189 AENNRQ 194


>08_02_1289 - 25923916-25924586,25925148-25926630
          Length = 717

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -3

Query: 462 ALQYVYLFIPLT*I---HMKF*NILLIHYFVINFLRYSLLPTASTRERGRLEV 313
           ALQY+Y  +P+  +   H+K  NILL   F      YSL+P  +     +L V
Sbjct: 519 ALQYLYDELPMLTVPHGHLKSSNILLNDRFEPLLTDYSLVPVMNQSHSAQLMV 571


>03_05_0937 -
           28967038-28967245,28967348-28967556,28967584-28967644,
           28967926-28968742,28968960-28971024
          Length = 1119

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +3

Query: 276 RCILRGPSPR-PTLLQAYPFPWCSRW 350
           + I+  PSP  P +  A  F WCS W
Sbjct: 755 KAIIHNPSPLIPPIFGADEFGWCSEW 780


>02_01_0008 -
           50576-50671,50767-50829,50918-50961,51048-51129,
           52205-52371,52502-52654,52780-52960,53452-53540,
           53599-53799,54804-55147,55397-55626
          Length = 549

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 120 RANKYWTSVRKPSLQQTPEAKKRL 191
           ++++Y    RKPSLQQ PE +K L
Sbjct: 148 KSSQYLLPSRKPSLQQIPEDQKPL 171


>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = -3

Query: 309  SALGTVHVICTVVDRFVAVSIRVVVFGRINDVRAVVNRFVAVSWPLGSVVGTVYVRWSST 130
            +++  +HV     +      +   V+    D  AVVN     S  + SV  T    W  T
Sbjct: 3425 ASVSALHVNNLTGEILTGAGVLFAVWSVNGDCLAVVNTSQLPSDLILSVASTTNSDWQDT 3484

Query: 129  YWHVSG 112
             W+V+G
Sbjct: 3485 NWYVTG 3490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,185,874
Number of Sequences: 37544
Number of extensions: 303203
Number of successful extensions: 900
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)