Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1110
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.0  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   4.0  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   5.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   6.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = +2

Query: 200 LTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLS 334
           +TT  T+     TTT   T  N +     T   P+ D      LS
Sbjct: 658 ITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQVDEVDDKELS 702



 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 84  RIRVRDENLSVGHSQQSEDENHEE 13
           R+R R +N   G   + +DE +EE
Sbjct: 265 RLRKRRQNDGEGADDRDDDEENEE 288



 Score = 21.8 bits (44), Expect = 4.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 167 DPRGQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVP 301
           +P    T    +TT  T+     TTT   T T  +TT + + T P
Sbjct: 650 EPGAPATTITTITTTTTT-----TTTTTTTTTTPNTTQNASATTP 689


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 279  CILRGPSPRPTLLQA 323
            C+LR  +P P +L+A
Sbjct: 1106 CVLRASTPAPVVLEA 1120


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 475 FFFLSTTICLFIYSVDINSY 416
           F++LSTT+   +Y++  N +
Sbjct: 336 FYYLSTTVNPLLYNIMSNKF 355


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 294 PSPRPTLLQAYPFPWCSRWEVKNILE 371
           P P+P L + YP    ++ ++  IL+
Sbjct: 31  PRPKPLLKKEYPLVMDTKLKIIEILQ 56


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +1

Query: 202 DNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTP 330
           +N  Y  N   +YN N N Y       Y ++  +  P   P P
Sbjct: 92  NNNNYNNNNYNNYNYNNNNYNNYKKLYYNINYIEQIPVPVPVP 134


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 241 NPNGNGYEPIDNGAYYVDRP 300
           N  GN  +  D+GA   DRP
Sbjct: 254 NAAGNNEDSSDSGAAASDRP 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,211
Number of Sequences: 438
Number of extensions: 3725
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)