Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1110
         (482 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06680.1 68418.m00754 tubulin family protein similar to SP|Q9...    30   0.94 
At3g53290.1 68416.m05876 cytochrome P450, putative Similar to Cy...    29   1.6  
At1g72110.1 68414.m08335 expressed protein                             28   2.9  
At1g07310.1 68414.m00778 C2 domain-containing protein contains s...    28   3.8  
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    27   5.0  
At2g37780.1 68415.m04639 DC1 domain-containing protein contains ...    27   5.0  
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex...    27   6.6  
At1g27470.1 68414.m03349 transducin-related / WD-40 repeat prote...    27   6.6  
At3g50370.1 68416.m05508 expressed protein                             27   8.8  
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product...    27   8.8  

>At5g06680.1 68418.m00754 tubulin family protein similar to
           SP|Q96CW5 Gamma-tubulin complex component 3 {Homo
           sapiens}
          Length = 838

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 9   EILHDFRPRSAGYGQRSSSHLEPGSWLFSARNRSTRIRANKYWTSV 146
           E +H+ + RS   G+  +   EPGSW+   R   T+ RA ++  S+
Sbjct: 744 EGIHELQIRSKESGREKNKSQEPGSWISEGRKGLTQ-RAGEFLQSM 788


>At3g53290.1 68416.m05876 cytochrome P450, putative Similar to
           Cytochrome P450 71B31 (SP:Q9SCN2)[Arabidopsis thaliana];
           conatins Pfam profile: PF00067 cytochrome P450
          Length = 407

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -2

Query: 481 FFFFFLSTTICLFIYSVDINSYEILKYIVNTLFRY*FSKIFFTSHREHQGK 329
           FF+ +LS++    + + D+ +    K +   LF Y F  I FT + E  G+
Sbjct: 2   FFYLYLSSSAKEVLKTHDLETCTRPKMVTTGLFSYNFKDIGFTQYGEEWGE 52


>At1g72110.1 68414.m08335 expressed protein
          Length = 479

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 424 NSYEILKYIVNTLFRY*-FSKIFFTSHREHQGK 329
           N+  I++ I NTL  +  FS I  T H EH+GK
Sbjct: 41  NASTIVEGIKNTLINHPRFSSILVTGHGEHKGK 73


>At1g07310.1 68414.m00778 C2 domain-containing protein contains
           similarity to shock protein SRC2 [Glycine max]
           gi|2055230|dbj|BAA19769 ; contains Pfam profile
           PF00168:C2 domain
          Length = 352

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 226 PPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFP 336
           PP  + P     +P+D    Y   PQG  Y+ P+P P
Sbjct: 141 PPPQHPPPRPQSQPLD----YYSAPQGNHYYSPSPPP 173


>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
            contains Pfam PF00400: WD domain, G-beta repeat; similar
            to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
            trafficking regulator - Bos taurus, EMBL: AF114785
          Length = 3471

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 297  TVHVICTVVDRFVAVSIRVVVFGRIN-DVRAVVNRFVAVSWPLGSVVGTVYVRWSSTYWH 121
            TV  I  +    V  +  V+    IN D  +VVN     +  + SV G+ +  W  T W+
Sbjct: 3370 TVVYINDLTGEIVTAAGSVLAVWSINGDCLSVVNTSQLPTDLIVSVAGSTFSDWLETTWY 3429

Query: 120  VSG 112
            V+G
Sbjct: 3430 VTG 3432


>At2g37780.1 68415.m04639 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain
          Length = 286

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = +1

Query: 229 PKDYNPNGNGYEPIDNGAYYVDRPQGRPYFK----PTPFPGARGG 351
           P+ Y P G GY+P  N  YY     G P  +    P  +P   GG
Sbjct: 154 PEPYPPQGGGYQP-QNQNYYPYMNSGSPKTESIGHPETYPPQGGG 197


>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 826

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = +1

Query: 223 NPPKDYN---PNGNGYEPIDNGAYYVDRPQGRP--YFKPTPFPGARG 348
           +PP +Y    P G    P ++  Y    P   P  Y++ TP P  RG
Sbjct: 766 SPPPEYQSPPPKGCNDSPSNDHHYQTPTPPSLPPPYYEDTPLPPIRG 812


>At1g27470.1 68414.m03349 transducin-related / WD-40 repeat
           protein-related contains 6 WD-40 repeats (PF00400) (2
           weak); related to KIAA1988 protein (GI:18916910) [Homo
           sapiens]
          Length = 810

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 9   EILHDFRPRSAGYGQRSSSHLEPGSWLFSARN 104
           E+LH F PR  G    S  H  P + L+++ N
Sbjct: 562 ELLHSFTPRQEGQEGESPPHEPPITKLYTSSN 593


>At3g50370.1 68416.m05508 expressed protein
          Length = 2179

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +1

Query: 211 PYIVNPPKDY-NPNGNGYEPIDNGAYYVDRPQGRP 312
           PY   P K Y NP G+ Y P     Y V +P+  P
Sbjct: 761 PYSPYPEKLYQNPEGDDYYPFGRPRYSVRQPRVLP 795


>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
           [Arabidopsis thaliana] GI:871782
          Length = 748

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 15  LHDFRPRSAGYGQRSSSHLE 74
           +H+ RP++A YG RS  H E
Sbjct: 386 IHESRPKTAVYGGRSPDHRE 405


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,505,671
Number of Sequences: 28952
Number of extensions: 240034
Number of successful extensions: 678
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)