Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1109
         (378 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   3.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   5.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   7.2  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    20   7.2  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    20   7.2  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 225 LVAG*FFSQIVGLRRP 178
           LVAG  F Q++G+R P
Sbjct: 345 LVAGTCFVQLIGMRVP 360


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 376 APHNTPEALPARGTRPNAPKH 314
           +P +TP +LP + T  + P +
Sbjct: 76  SPSSTPSSLPTQRTSTSNPTY 96


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 268  ALCPCISIGESRLRSRCRLIFQPDSWPQTSSIRKAK*ITKKNQG 137
            +LC  I+ G + L S    +   DSW    +    K ++ K++G
Sbjct: 2348 SLCTHINYGFAVLDSSSMTLKPHDSWADIDNEFYKKVVSYKSRG 2391


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 272 HRSLSLYIDRRVASALSLPANFS 204
           ++S S+ +   +++   LPANFS
Sbjct: 35  NKSNSITVPLSISTGQRLPANFS 57


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 196 YLAEKLAGNESADATRRSIYK 258
           Y+A  + G+ S +A  R  YK
Sbjct: 51  YIAVSIFGSSSFEADLRQFYK 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,332
Number of Sequences: 336
Number of extensions: 1737
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7803226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)