Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1109
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   1.3  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    26   2.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   9.1  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    24   9.1  

>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 32  TLTSARLVHH*TLRGNKINFVHKLLNDVSLHVPRLPLVLFGDLFGFSDAGRLRP 193
           TL+S RL+H      +  + +   +    LH+P   L L+  +F F+ +GR+ P
Sbjct: 196 TLSSGRLLHLNLKDSDGNSSIQVRILFPGLHIPNCLLSLYNSIFAFT-SGRVIP 248


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 156 SPKRTKGKRGTCKLTSFKSL 97
           S +RTKGK+G  K ++F+S+
Sbjct: 55  SNRRTKGKKGNGKASNFQSM 74


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 129 LVCPWFFLVIYL-AFLMLDV*GQLSG*KISRQRERRRDSPIDIQGQRAVR 275
           L+C +    I+  AFL+  + G  S  KIS  +   RDS  ++Q ++ +R
Sbjct: 9   LICVFCISNIFTQAFLVHQIYGNSSFTKISLNQLEGRDSQEELQRRQEIR 58


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -3

Query: 340 GTRPNAPKHPRLSSQAERL-IPARTALCPCISIG-ESRLRSRCRLIFQPDSWPQTSS 176
           G +    K    + + E++ +    ALCP ISIG E   +  C+     +++  T +
Sbjct: 21  GNKKRKRKERGQNKRREKIHVKENNALCPAISIGNECPYKENCKFPHDVEAYLATKA 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,561,797
Number of Sequences: 5004
Number of extensions: 29941
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)