Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1109
(378 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570... 32 0.17
05_05_0185 + 23064249-23064448,23064881-23064950,23065082-230651... 31 0.23
03_04_0053 + 16873735-16873927,16874011-16874162,16874286-168743... 28 2.8
11_06_0155 - 20712601-20713553,20713618-20714000,20714240-207142... 27 3.7
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541... 27 3.7
03_02_0489 + 8836306-8836500,8836906-8837082,8837175-8837321,883... 27 3.7
07_01_0863 + 7177443-7177471,7178300-7178399,7178628-7178899,717... 27 4.9
03_01_0151 + 1206555-1206998,1207112-1207543 27 4.9
02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694... 27 4.9
01_03_0150 + 13220224-13220468,13221903-13222124,13222164-132223... 27 6.5
12_01_0453 - 3572745-3572918,3573370-3573430,3573646-3573783,357... 26 8.6
09_04_0534 + 18393794-18394066 26 8.6
07_03_0328 + 16833423-16833541,16833638-16833791,16834449-168344... 26 8.6
02_02_0460 + 10518598-10518629,10519751-10519921,10521817-105219... 26 8.6
>04_03_0925 -
20856628-20856690,20856786-20856845,20856924-20857001,
20857127-20857192,20857542-20858675,20858991-20860283
Length = 897
Score = 31.9 bits (69), Expect = 0.17
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -2
Query: 362 PRGAPGTRHPPERTKAPAS*LASRTADTSPHRSLSLYIDRRVASALSLPAN 210
PR PGT P PA+ ASRTA + + + + RR A+A + A+
Sbjct: 105 PRKPPGTTAPVAARNIPATTAASRTATRATTTTTATSVSRRPAAAAAAVAS 155
>05_05_0185 +
23064249-23064448,23064881-23064950,23065082-23065120,
23065639-23066067,23067322-23067627
Length = 347
Score = 31.5 bits (68), Expect = 0.23
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 210 ISRQRERRRDSPIDIQGQRAVRAGISRSACELRRGCFGAFGRVPR 344
I R + + P D +G + G++R + E+ GC GA GR R
Sbjct: 111 ILRMFHKEAEEPADDEGAAGKKQGMARDSDEVSPGCRGADGRCSR 155
>03_04_0053 +
16873735-16873927,16874011-16874162,16874286-16874380,
16874704-16874818,16875054-16875343,16875436-16875585,
16876478-16876598,16876671-16876942,16877466-16877937
Length = 619
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -1
Query: 210 FFSQIVGLRRPASEKPNR--SPKRTKGKRGTCKLTS 109
FFS P + P+ SP+RT RG C+LT+
Sbjct: 14 FFSGAHAAAHPRTRTPHHHCSPQRTHDARGRCRLTA 49
>11_06_0155 -
20712601-20713553,20713618-20714000,20714240-20714271,
20714315-20714571,20714699-20714724,20714894-20715081,
20715302-20715595,20715714-20715752,20715827-20715944,
20716076-20716157,20716610-20716668,20717156-20717221,
20717358-20717447,20718142-20718236
Length = 893
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -3
Query: 346 ARGTRPNAPKHPRLSSQAERLIPARTALCPCISIGESRLRSRCRLIFQPDS 194
A GTRPN P+ S + + L +SI + RC IF P S
Sbjct: 21 ATGTRPNPPRRRERESASVHFPFSACQLLHKLSIETTATFYRCNSIFSPFS 71
>08_01_0619 +
5412058-5413224,5413357-5413476,5413755-5413831,
5414201-5414321
Length = 494
Score = 27.5 bits (58), Expect = 3.7
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Frame = -2
Query: 374 PA*HPRGAPGTRHPPERTKAPAS*LASRTADTSPHRSLSL---YIDRRVASAL--SLPAN 210
P H R +P PP + PA+ +A D SP +++ + RR A L L
Sbjct: 37 PRRHHRPSPSIPPPPPPQRPPAATVAPSVPDPSPSGHVTIRPSELSRREAQVLRARLTGE 96
Query: 209 FS-AR*LASDVQHQKSQIDHQKEPRANEVHAN 117
S R L SD+ +++ EP H +
Sbjct: 97 LSRVRALLSDIDGWEARRRRPAEPPRQRGHVS 128
>03_02_0489 +
8836306-8836500,8836906-8837082,8837175-8837321,
8837636-8837737,8837824-8837894,8837992-8838059,
8838595-8838836
Length = 333
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 243 PIDIQGQRAVRAGISRSACELRRGCFGAFGRVPRAGSASGVLCG 374
P+D+ +R G + A + G FG FG + R S G+ G
Sbjct: 257 PLDLVRRRMQLEGAAGRARVYQTGLFGTFGHIVRTESLRGLYRG 300
>07_01_0863 +
7177443-7177471,7178300-7178399,7178628-7178899,
7179143-7179794,7179886-7180085,7180317-7180417,
7180559-7181697
Length = 830
Score = 27.1 bits (57), Expect = 4.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 204 SQIVGLRRPASEKPNRSPKRTKGKRGT 124
SQ L+ P + NR+PK++K K +
Sbjct: 741 SQATDLQEPLDRRENRAPKKSKSKEAS 767
>03_01_0151 + 1206555-1206998,1207112-1207543
Length = 291
Score = 27.1 bits (57), Expect = 4.9
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -2
Query: 377 RPA*HPRGAPGTRHPPERTKAPAS*LASRTADTSPHRSLSLYIDRRVASALSL-PANFSA 201
RP PR AP PPE+ K P R + R+ ++ +AS SL P+N+
Sbjct: 92 RPRPRPRAAP----PPEKRKKPEEAENQRMTHIAVERNRRRLMNDHLASLRSLIPSNYIP 147
Query: 200 R 198
R
Sbjct: 148 R 148
>02_04_0544 -
23768808-23768910,23769005-23769030,23769379-23769497,
23769542-23769668,23769842-23769905,23769981-23770095,
23770867-23771101,23771196-23771382,23771948-23772305,
23772432-23772465
Length = 455
Score = 27.1 bits (57), Expect = 4.9
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = -2
Query: 365 HPRGAPGTRHPPERTKAPAS*LASRTADTSPHRSLSLYIDRRVASALSLPANFSAR*LAS 186
H A G++ +KAPA+ A TA PH S + ++ L+ ++
Sbjct: 372 HVISAQGSKSAQPSSKAPANIAAKPTAYRPPHSKNSADVQDKLFGGLASTGGE----MSK 427
Query: 185 DVQHQKSQIDHQKEPRANE 129
+ K + + QKE +A E
Sbjct: 428 NALRNKKRREKQKEKKAAE 446
>01_03_0150 +
13220224-13220468,13221903-13222124,13222164-13222376,
13222549-13222691,13225813-13226387,13226776-13227155,
13227256-13227342,13227469-13227799,13227880-13228290,
13228373-13228432,13228561-13228761
Length = 955
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 258 GQRAVRAGISRSACELRRGCFGAFGRVPRAGSASGVL 368
G R A +R+ E RRG AF R+G+ G L
Sbjct: 351 GMRIATAANARTTVEARRGIGPAFAAAFRSGAVMGFL 387
>12_01_0453 -
3572745-3572918,3573370-3573430,3573646-3573783,
3573882-3574003,3574078-3574233,3575337-3575477,
3575643-3576044
Length = 397
Score = 26.2 bits (55), Expect = 8.6
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -2
Query: 335 PPERTKAPAS*LASRTADTSPHRSLSLYIDRRVASAL 225
PP R PA+ L + + SP R LS RRVA+ L
Sbjct: 9 PPLRL-LPATLLRATSRPASPRRGLSYSYPRRVAAVL 44
>09_04_0534 + 18393794-18394066
Length = 90
Score = 26.2 bits (55), Expect = 8.6
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 141 WFFLVIYLAFLMLDV*GQLSG*KISRQRERRRDSPIDIQGQRAVRAGISRSACE-LRRGC 317
W +V ++ F + G G + SR+R RRR SP+ + AGI C+ GC
Sbjct: 29 WLSVVAWIIFTSVGD-GDEGGGRGSRRRRRRRSSPVFVGA-----AGI----CDGTGPGC 78
Query: 318 FGAFG 332
G FG
Sbjct: 79 SGGFG 83
>07_03_0328 +
16833423-16833541,16833638-16833791,16834449-16834490,
16834964-16835104,16835471-16835728,16835857-16836492
Length = 449
Score = 26.2 bits (55), Expect = 8.6
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 98 KLLNDVSLHVPRLPLVLFG--DLFGFSDAGRLRPTIWL 205
++ + V+ H+PRL V FG D + GR+ IW+
Sbjct: 75 RIASSVASHLPRLSSVQFGQKDWMDLAILGRVDEAIWV 112
>02_02_0460 +
10518598-10518629,10519751-10519921,10521817-10521940,
10523596-10523640
Length = 123
Score = 26.2 bits (55), Expect = 8.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 319 KHPRLSSQAERLIPARTALCP 257
KHPRL+S+ ++P CP
Sbjct: 54 KHPRLASEPSAMVPRLRLRCP 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,111,218
Number of Sequences: 37544
Number of extensions: 230283
Number of successful extensions: 782
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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