Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1109
(378 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37976| Best HMM Match : Tubulin (HMM E-Value=4.5e-18) 29 0.95
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059) 29 1.7
SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 2.9
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 2.9
SB_48720| Best HMM Match : DAGAT (HMM E-Value=1.5e-09) 27 3.8
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 27 5.1
SB_25070| Best HMM Match : RVT_1 (HMM E-Value=1.4e-15) 27 5.1
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_12945| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_12469| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 27 5.1
SB_12029| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 27 5.1
SB_5933| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 27 5.1
SB_49894| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 27 5.1
SB_49441| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 27 5.1
SB_43612| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 27 5.1
SB_42594| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 27 5.1
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_27212| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 27 5.1
SB_25973| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 27 5.1
SB_59615| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94) 27 6.7
SB_16901| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_6579| Best HMM Match : RVT_1 (HMM E-Value=2.5e-14) 27 6.7
SB_17383| Best HMM Match : LytTR (HMM E-Value=2.4) 27 6.7
SB_14881| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_52266| Best HMM Match : DUF1665 (HMM E-Value=1.3) 26 8.8
>SB_37976| Best HMM Match : Tubulin (HMM E-Value=4.5e-18)
Length = 553
Score = 29.5 bits (63), Expect = 0.95
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -1
Query: 198 IVGLRRPASEKPNRSPKRTKGKRGTCKLTSFKSLCT 91
+VG+ +P EKP +S K+T K GT K T + CT
Sbjct: 225 LVGVLQPLGEKP-KSIKKTSKKVGTRKGTKEEKKCT 259
>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
Length = 765
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 376 APHNTPEALPARGTRPNAPKHPRLSSQAERLIP 278
+P +TP ++P N P HP LSS+ E +P
Sbjct: 593 SPASTPASIPESAN--NTPLHPSLSSKQETNVP 623
>SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 893
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 377 RPA*HPRGAPGTRHPPERTKAPAS 306
+P HPRG TR P E ++P S
Sbjct: 658 QPIVHPRGPRATRRPEEGVRSPVS 681
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 353 APGTRHPPERTKAPAS*LASRTAD 282
AP T PPE+T AP + +A T D
Sbjct: 698 APATTMPPEQTAAPETTVAPETTD 721
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2
Query: 353 APGTRHPPERTKAPAS*LASRTAD 282
AP T PE T APA+ LAS T D
Sbjct: 710 APETTVAPETTDAPATTLASETTD 733
>SB_48720| Best HMM Match : DAGAT (HMM E-Value=1.5e-09)
Length = 244
Score = 27.5 bits (58), Expect = 3.8
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 108 MMSVCMYLVCPWFFLVIYLAFLMLD 182
M+ +C++L WF +V+YL ++ D
Sbjct: 37 MVFLCLFLTPLWFVVVLYLGWVFYD 61
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 177 ASEKPNRSPKRTKGKRGTCKLTSFKS 100
+S P +SPK TKGK+ + FKS
Sbjct: 34 SSVSPTKSPKGTKGKKRPSSSSVFKS 59
>SB_25070| Best HMM Match : RVT_1 (HMM E-Value=1.4e-15)
Length = 385
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 276 PAPLSVLVYRSASRVCALVAG*F 208
P+P SVLV RS R CA G F
Sbjct: 352 PSPTSVLVCRSCGRTCASRIGLF 374
>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 27.1 bits (57), Expect = 5.1
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 214 AGNESADATRRSIYKDRERCGLVSAVRLAS*DAGALVRSGG 336
AG +DA R R CG +R S DAG +VR G
Sbjct: 62 AGRVESDAGRVMQDAGRVGCGTCQGMRDVSRDAGRVVRDAG 102
>SB_12945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 276 PAPLSVLVYRSASRVCALVAG*F 208
P+P SVLV RS R CA G F
Sbjct: 255 PSPTSVLVCRSCGRTCASRIGLF 277
>SB_12469| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 127
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 276 PAPLSVLVYRSASRVCALVAG*F 208
P+P SVLV RS R CA G F
Sbjct: 94 PSPTSVLVCRSCGRTCASRIGLF 116
>SB_12029| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 192
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 276 PAPLSVLVYRSASRVCALVAG*F 208
P+P SVLV RS R CA G F
Sbjct: 159 PSPTSVLVCRSCGRTCASRIGLF 181
>SB_5933| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 174
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 276 PAPLSVLVYRSASRVCALVAG*F 208
P+P SVLV RS R CA G F
Sbjct: 141 PSPTSVLVCRSCGRTCASRIGLF 163
>SB_49894| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 226
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 276 PAPLSVLVYRSASRVCALVAG*F 208
P+P SVLV RS R CA G F
Sbjct: 193 PSPTSVLVCRSCGRTCASRIGLF 215
>SB_49441| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 96
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 276 PAPLSVLVYRSASRVCALVAG*F 208
P+P SVLV RS R CA G F
Sbjct: 58 PSPTSVLVCRSCGRTCASRIGLF 80
>SB_43612| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 174
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 276 PAPLSVLVYRSASRVCALVAG*F 208
P+P SVLV RS R CA G F
Sbjct: 141 PSPTSVLVCRSCGRTCASRIGLF 163
>SB_42594| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 186
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 276 PAPLSVLVYRSASRVCALVAG*F 208
P+P SVLV RS R CA G F
Sbjct: 153 PSPTSVLVCRSCGRTCASRIGLF 175
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 353 APGTRHPPERTKAPAS*LASRTADT 279
APGT PPE T+ P + + S T T
Sbjct: 3632 APGTTVPPETTETPETTVVSETTVT 3656
>SB_27212| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 256
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 276 PAPLSVLVYRSASRVCALVAG*F 208
P+P SVLV RS R CA G F
Sbjct: 223 PSPTSVLVCRSCGRTCASRIGLF 245
>SB_25973| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 416
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 276 PAPLSVLVYRSASRVCALVAG*F 208
P+P SVLV RS R CA G F
Sbjct: 383 PSPTSVLVCRSCGRTCASRIGLF 405
>SB_59615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 752
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 211 LAGNESADATRRSIYKDRERCGLVSAVRLAS*DAGAL 321
+ G+ + +TR S R +CGL ++++ + D+G L
Sbjct: 103 VTGDFNPTSTRLSAATIRRKCGLTQSIKVLTRDSGTL 139
>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
Length = 450
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -3
Query: 367 NTPEALPARGT-RPNAPKHPRLSSQAERLIPARTALCP 257
N+P +P RPN P+ LSS+ + P R L P
Sbjct: 310 NSPRRVPVSPRQRPNLPRRVPLSSRQQSNSPRRVPLSP 347
>SB_16901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 909
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 264 RAVRAGISRSACELRRGCFGAFGRVPRAGSAS 359
+ V AG+S +C+L GC F P S++
Sbjct: 400 KEVIAGVSSCSCDLNEGCMEEFTENPVVSSSA 431
>SB_6579| Best HMM Match : RVT_1 (HMM E-Value=2.5e-14)
Length = 952
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 211 LAGNESADATRRSIYKDRERCGLVSAVRLAS*DAGAL 321
+ G+ + +AT+ S R+ CG+ VR+ + D G L
Sbjct: 329 VTGDFNPNATKMSASVFRQACGIFQVVRVLTRDTGVL 365
>SB_17383| Best HMM Match : LytTR (HMM E-Value=2.4)
Length = 536
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 271 TALCPCISIGESRLRSRCRLIFQPDSWPQTSSIR 170
++ CPC S E R R R + + PDS+ + I+
Sbjct: 286 SSFCPCHSCYEMRERVRVQWMLSPDSFLLETQIK 319
>SB_14881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 211 LAGNESADATRRSIYKDRERCGLVSAVRLAS*DAGAL 321
+ G+ + +TR S R +CGL +++ + D+G L
Sbjct: 283 VTGDFNPTSTRLSAATIRRKCGLTQTIKILTLDSGTL 319
>SB_52266| Best HMM Match : DUF1665 (HMM E-Value=1.3)
Length = 697
Score = 26.2 bits (55), Expect = 8.8
Identities = 22/88 (25%), Positives = 35/88 (39%)
Frame = -2
Query: 365 HPRGAPGTRHPPERTKAPAS*LASRTADTSPHRSLSLYIDRRVASALSLPANFSAR*LAS 186
HPR AP PP++ P + A P + + +++ S L + F R S
Sbjct: 125 HPRPAPKPSAPPQKYSDPKAKYGVSVAKKKPTKIIPIFL----PSECLLNSLFQGR-AGS 179
Query: 185 DVQHQKSQIDHQKEPRANEVHAN*HHSK 102
D + ++ +KE NE H K
Sbjct: 180 DKNKEDARERRRKELMQNEDQKYQDHMK 207
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,694,148
Number of Sequences: 59808
Number of extensions: 262206
Number of successful extensions: 901
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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