Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1109
         (378 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like pro...    31   0.94 
AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein.     31   0.94 
X95520-1|CAA64774.1| 1112|Homo sapiens cyclic nucleotide phospho...    31   1.2  
U38178-1|AAC50724.1| 1112|Homo sapiens cyclic nucleotide phophod...    31   1.2  
D50640-1|BAA09306.1| 1112|Homo sapiens phosphodiesterase 3B prot...    31   1.2  
BC150307-1|AAI50308.1| 1112|Homo sapiens phosphodiesterase 3B, c...    31   1.2  
BC048266-1|AAH48266.1|  566|Homo sapiens downstream neighbor of ...    31   1.2  
AY459346-1|AAR24292.1| 1112|Homo sapiens cGMP-inhibited cAMP pho...    31   1.2  
AK074964-1|BAC11320.1|  566|Homo sapiens protein ( Homo sapiens ...    31   1.2  
AB209326-1|BAD92563.1|  298|Homo sapiens phosphodiesterase 3B, c...    31   1.2  
AK074875-1|BAC11259.1|  120|Homo sapiens protein ( Homo sapiens ...    30   2.2  
BC112215-1|AAI12216.1|  181|Homo sapiens chromosome 6 open readi...    29   6.6  
BC110329-1|AAI10330.1|  305|Homo sapiens KIAA1715 protein protein.     29   6.6  
BC105134-1|AAI05135.1|  428|Homo sapiens Lunapark protein.             29   6.6  
BC105132-1|AAI05133.1|  428|Homo sapiens KIAA1715 protein.             29   6.6  
BC031530-1|AAH31530.1|  128|Homo sapiens KIAA1715 protein protein.     29   6.6  
AK056532-1|BAB71207.1|  423|Homo sapiens protein ( Homo sapiens ...    29   6.6  
AB051502-1|BAB21806.1|  429|Homo sapiens KIAA1715 protein protein.     29   6.6  
AB016899-1|BAA78634.1|  181|Homo sapiens HGC6.1.1 protein.             29   6.6  
BC127007-1|AAI27008.1|   90|Homo sapiens JHDM1D protein protein.       28   8.8  
AB209159-1|BAD92396.1| 1574|Homo sapiens Thyroglobulin precursor...    28   8.8  
AB051505-1|BAB21809.1|  377|Homo sapiens KIAA1718 protein protein.     28   8.8  

>BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like
           protein rA9 protein.
          Length = 1649

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -3

Query: 373 PHNTPEALPARGTRPNAPKHPRLSSQAERLIPARTALCP 257
           P   P   PA+G   N P+   LS Q     PARTA  P
Sbjct: 561 PRALPSGSPAQGPSGNRPQSTGLSCQGRSRTPARTAGAP 599


>AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein.
          Length = 1654

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -3

Query: 373 PHNTPEALPARGTRPNAPKHPRLSSQAERLIPARTALCP 257
           P   P   PA+G   N P+   LS Q     PARTA  P
Sbjct: 566 PRALPSGSPAQGPSGNRPQSTGLSCQGRSRTPARTAGAP 604


>X95520-1|CAA64774.1| 1112|Homo sapiens cyclic nucleotide
           phosphodiesterase protein.
          Length = 1112

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -3

Query: 325 APKHPRLSSQAERLIPA--RTALCPCISIGESRLR--SRCRLIFQP 200
           AP HPRLSS AE  +P         C+S+GE+       C++  +P
Sbjct: 272 APLHPRLSSAAEEKVPVIRPRRRSSCVSLGETAASYYGSCKIFRRP 317


>U38178-1|AAC50724.1| 1112|Homo sapiens cyclic nucleotide
           phophodiesterase protein.
          Length = 1112

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -3

Query: 325 APKHPRLSSQAERLIPA--RTALCPCISIGESRLR--SRCRLIFQP 200
           AP HPRLSS AE  +P         C+S+GE+       C++  +P
Sbjct: 272 APLHPRLSSAAEEKVPVIRPRRRSSCVSLGETAASYYGSCKIFRRP 317


>D50640-1|BAA09306.1| 1112|Homo sapiens phosphodiesterase 3B
           protein.
          Length = 1112

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -3

Query: 325 APKHPRLSSQAERLIPA--RTALCPCISIGESRLR--SRCRLIFQP 200
           AP HPRLSS AE  +P         C+S+GE+       C++  +P
Sbjct: 272 APLHPRLSSAAEEKVPVIRPRRRSSCVSLGETAASYYGSCKIFRRP 317


>BC150307-1|AAI50308.1| 1112|Homo sapiens phosphodiesterase 3B,
           cGMP-inhibited protein.
          Length = 1112

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -3

Query: 325 APKHPRLSSQAERLIPA--RTALCPCISIGESRLR--SRCRLIFQP 200
           AP HPRLSS AE  +P         C+S+GE+       C++  +P
Sbjct: 272 APLHPRLSSAAEEKVPVIRPRRRSSCVSLGETAASYYGSCKIFRRP 317


>BC048266-1|AAH48266.1|  566|Homo sapiens downstream neighbor of SON
           protein.
          Length = 566

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = -2

Query: 362 PRGAPGTRHPPERTKAPAS*LASRTADTSPHRSLSLYIDRRVASALSLP 216
           P  +PG R PPE  +       SR A  SP R L+    RR A    LP
Sbjct: 6   PGYSPGFRKPPEVVRLRRKRARSRGAAASPPRELTEPAARRAALVAGLP 54


>AY459346-1|AAR24292.1| 1112|Homo sapiens cGMP-inhibited cAMP
           phophodiesterase protein.
          Length = 1112

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -3

Query: 325 APKHPRLSSQAERLIPA--RTALCPCISIGESRLR--SRCRLIFQP 200
           AP HPRLSS AE  +P         C+S+GE+       C++  +P
Sbjct: 272 APLHPRLSSAAEEKVPVIRPRRRSSCVSLGETAASYYGSCKIFRRP 317


>AK074964-1|BAC11320.1|  566|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90483 fis, clone NT2RP3002983. ).
          Length = 566

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = -2

Query: 362 PRGAPGTRHPPERTKAPAS*LASRTADTSPHRSLSLYIDRRVASALSLP 216
           P  +PG R PPE  +       SR A  SP R L+    RR A    LP
Sbjct: 6   PGYSPGFRKPPEVVRLRRKRARSRGAAASPPRELTEPAARRAALVAGLP 54


>AB209326-1|BAD92563.1|  298|Homo sapiens phosphodiesterase 3B,
           cGMP-inhibited variant protein.
          Length = 298

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -3

Query: 325 APKHPRLSSQAERLIPA--RTALCPCISIGESRLR--SRCRLIFQP 200
           AP HPRLSS AE  +P         C+S+GE+       C++  +P
Sbjct: 210 APLHPRLSSAAEEKVPVIRPRRRSSCVSLGETAASYYGSCKIFRRP 255


>AK074875-1|BAC11259.1|  120|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90394 fis, clone NT2RP2005632. ).
          Length = 120

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = -3

Query: 310 RLSSQAERLIPARTALCPCISIGESRLRSRCRLIFQPDSWPQTSSIRK 167
           RLS  + ++I ++T +C C++ G+ R   RCR + + +     + +R+
Sbjct: 27  RLSMISRQVICSQTRMCLCLAPGDDRRVHRCRDVRKGEQMKSRNGLRE 74


>BC112215-1|AAI12216.1|  181|Homo sapiens chromosome 6 open reading
           frame 54 protein.
          Length = 181

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 267 AVRAGISR--SACELRRGCFGAFGRVPRAGSASG 362
           AVR  I+R  S C L +GC  A+G +P+A   +G
Sbjct: 135 AVRVMIARDPSTCHLAKGCSPAWGFLPQARGPAG 168


>BC110329-1|AAI10330.1|  305|Homo sapiens KIAA1715 protein protein.
          Length = 305

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 349 PARGTRPNAPKHPRLSSQAERLIPARTALCP 257
           PAR TRP AP+ P  S +  +++   +++ P
Sbjct: 183 PARKTRPQAPRLPEFSFEKRQVVEGSSSVGP 213


>BC105134-1|AAI05135.1|  428|Homo sapiens Lunapark protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 349 PARGTRPNAPKHPRLSSQAERLIPARTALCP 257
           PAR TRP AP+ P  S +  +++   +++ P
Sbjct: 306 PARKTRPQAPRLPEFSFEKRQVVEGSSSVGP 336


>BC105132-1|AAI05133.1|  428|Homo sapiens KIAA1715 protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 349 PARGTRPNAPKHPRLSSQAERLIPARTALCP 257
           PAR TRP AP+ P  S +  +++   +++ P
Sbjct: 306 PARKTRPQAPRLPEFSFEKRQVVEGSSSVGP 336


>BC031530-1|AAH31530.1|  128|Homo sapiens KIAA1715 protein protein.
          Length = 128

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 349 PARGTRPNAPKHPRLSSQAERLIPARTALCP 257
           PAR TRP AP+ P  S +  +++   +++ P
Sbjct: 6   PARKTRPQAPRLPEFSFEKRQVVEGSSSVGP 36


>AK056532-1|BAB71207.1|  423|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31970 fis, clone NT2RP7008133. ).
          Length = 423

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 349 PARGTRPNAPKHPRLSSQAERLIPARTALCP 257
           PAR TRP AP+ P  S +  +++   +++ P
Sbjct: 301 PARKTRPQAPRLPEFSFEKRQVVEGSSSVGP 331


>AB051502-1|BAB21806.1|  429|Homo sapiens KIAA1715 protein protein.
          Length = 429

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 349 PARGTRPNAPKHPRLSSQAERLIPARTALCP 257
           PAR TRP AP+ P  S +  +++   +++ P
Sbjct: 307 PARKTRPQAPRLPEFSFEKRQVVEGSSSVGP 337


>AB016899-1|BAA78634.1|  181|Homo sapiens HGC6.1.1 protein.
          Length = 181

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 267 AVRAGISR--SACELRRGCFGAFGRVPRAGSASG 362
           AVR  I+R  S C L +GC  A+G +P+A   +G
Sbjct: 135 AVRVMIARDPSTCHLAKGCSPAWGFLPQARGPAG 168


>BC127007-1|AAI27008.1|   90|Homo sapiens JHDM1D protein protein.
          Length = 90

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 186 RRPASEKPNRSPKRTKGKRGTCKLTSFKSLCTKLILFPRN 67
           +RPAS  P  S + TKGKR    + + K    K++   RN
Sbjct: 44  KRPASNPPPISNQATKGKRPKKGMATAKQRLGKILKLNRN 83


>AB209159-1|BAD92396.1| 1574|Homo sapiens Thyroglobulin precursor
           variant protein.
          Length = 1574

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 343 RGTRPNAPKHPR--LSSQAERLIPARTALCPCISIGESRLRSRCRLIFQPDSW 191
           R  RP+ P+ PR  L   A  ++   T LC  IS        +C+L+ +  SW
Sbjct: 9   RPVRPSLPRSPRCPLPFNASEVVGG-TILCETISGPTGSAMQQCQLLCRQGSW 60


>AB051505-1|BAB21809.1|  377|Homo sapiens KIAA1718 protein protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 186 RRPASEKPNRSPKRTKGKRGTCKLTSFKSLCTKLILFPRN 67
           +RPAS  P  S + TKGKR    + + K    K++   RN
Sbjct: 331 KRPASNPPPISNQATKGKRPKKGMATAKQRLGKILKLNRN 370


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,609,352
Number of Sequences: 237096
Number of extensions: 1193813
Number of successful extensions: 3628
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3625
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)