Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1109
         (378 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051440-1|AAK92864.1|  570|Drosophila melanogaster GH11140p pro...    28   3.5  
AE014297-2075|AAF55219.1|  570|Drosophila melanogaster CG4525-PA...    28   3.5  
BT001284-1|AAN71040.1|  588|Drosophila melanogaster AT08275p pro...    27   6.1  
BT023830-1|AAZ86751.1|  200|Drosophila melanogaster LP08087p pro...    27   8.0  
AE014298-749|AAN09144.1|  200|Drosophila melanogaster CG32762-PA...    27   8.0  

>AY051440-1|AAK92864.1|  570|Drosophila melanogaster GH11140p
           protein.
          Length = 570

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 171 EKPNRSPKRTKGKRGTCKLTSFKSLCTK 88
           EK + SP+  +GKRG C    F +LCTK
Sbjct: 504 EKLDPSPENWEGKRGACAGVLF-ALCTK 530


>AE014297-2075|AAF55219.1|  570|Drosophila melanogaster CG4525-PA
           protein.
          Length = 570

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 171 EKPNRSPKRTKGKRGTCKLTSFKSLCTK 88
           EK + SP+  +GKRG C    F +LCTK
Sbjct: 504 EKLDPSPENWEGKRGACAGVLF-ALCTK 530


>BT001284-1|AAN71040.1|  588|Drosophila melanogaster AT08275p
           protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
 Frame = +3

Query: 117 VCMYLVCP--WFFLVIYLAFLMLDV*GQLSG*KISRQRERRRDSPIDIQGQRAVRAGISR 290
           V M+ + P  WFFL + L FL       +SG K +        S  D       R     
Sbjct: 3   VTMHSLTPQWWFFLSLILFFL-----DWISGFKFTLLHTNDMHSRFDPISDTGGRCKTVD 57

Query: 291 SACELRRGCFGAFGRVPRAGSAS 359
            A  +   CFG FGRV  A SA+
Sbjct: 58  DAMGI---CFGGFGRVAEAVSAA 77


>BT023830-1|AAZ86751.1|  200|Drosophila melanogaster LP08087p
           protein.
          Length = 200

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -3

Query: 373 PHNTPEALPARGTRPNAPKHPRLSSQAERLIPARTALCPC 254
           P   P    AR T  N P  P++ SQ    +  RTA   C
Sbjct: 26  PSRRPPVTTARTTPRNCPLFPQVCSQTSPRVCGRTARGEC 65


>AE014298-749|AAN09144.1|  200|Drosophila melanogaster CG32762-PA
           protein.
          Length = 200

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -3

Query: 373 PHNTPEALPARGTRPNAPKHPRLSSQAERLIPARTALCPC 254
           P   P    AR T  N P  P++ SQ    +  RTA   C
Sbjct: 26  PSRRPPVTTARTTPRNCPLFPQVCSQTSPRVCGRTARGEC 65


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,186,689
Number of Sequences: 53049
Number of extensions: 372133
Number of successful extensions: 1129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1003372560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)