Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1109
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    28   2.5  
Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    27   3.4  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   3.4  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   3.4  
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ...    27   3.4  

>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 21/58 (36%), Positives = 27/58 (46%)
 Frame = -3

Query: 349 PARGTRPNAPKHPRLSSQAERLIPARTALCPCISIGESRLRSRCRLIFQPDSWPQTSS 176
           PA   RP +    ++S   E L  A +A  P +  G  R RSR  +    DS P TSS
Sbjct: 542 PAPRGRPRSRSAAKVSENTEPLSEAPSA--P-VKRGRGRPRSRSTMSITEDSEPSTSS 596


>Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical
           protein F59F4.3 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -3

Query: 370 HNTPEALPARGTRPNAPKHPRLSSQAERLIPARTALCP 257
           HNT E  P R  RP+ PK        + +I   T   P
Sbjct: 180 HNTTETTPLRPPRPSRPKFEEPDDDEDEVIEVVTEPVP 217


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 185  DVQHQKSQIDHQKEPRANEVHAN*HHSKVCV 93
            +  +Q SQ D  +E + + VH N H   VCV
Sbjct: 3713 ETSNQPSQFDSLQEQKPSVVHENEHVRSVCV 3743


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 185  DVQHQKSQIDHQKEPRANEVHAN*HHSKVCV 93
            +  +Q SQ D  +E + + VH N H   VCV
Sbjct: 3713 ETSNQPSQFDSLQEQKPSVVHENEHVRSVCV 3743


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 185  DVQHQKSQIDHQKEPRANEVHAN*HHSKVCV 93
            +  +Q SQ D  +E + + VH N H   VCV
Sbjct: 3713 ETSNQPSQFDSLQEQKPSVVHENEHVRSVCV 3743


>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
           protein Y53F4B.9 protein.
          Length = 1168

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 171 EKPNRSPKRTKGKRGTCKLTSFKSLCTKLILFPR 70
           +K  RS  +T  KRGT     F  +C+  ++ PR
Sbjct: 147 QKYRRSMSKTPQKRGTSGKLKFNKICSIRVITPR 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,998,144
Number of Sequences: 27780
Number of extensions: 179658
Number of successful extensions: 585
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)