Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1109
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    28   0.032
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   4.8  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   6.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   6.4  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   6.4  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   6.4  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 28.3 bits (60), Expect = 0.032
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +3

Query: 51  WFITEHCVGIKLILYTNF*MMSVCMYLVCPWFFLVIYLAFLMLDV*GQL 197
           +F  +    +KL+L  NF    +C+ +V     +++Y+AF++L   G L
Sbjct: 381 FFYVQEDDDVKLVLL-NFGWQMICLIVVIALVSIIMYIAFIILQYAGLL 428


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 362 PRGAPGTRHPPERTKAPAS 306
           P GAP +++P +   +PAS
Sbjct: 51  PPGAPPSQNPSQMMISPAS 69


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 10  HALSARAHANLSTTGSSLNIAWE 78
           H  +AR H +L T    L + W+
Sbjct: 121 HHDNARPHTSLVTRQKLLELGWD 143


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 10  HALSARAHANLSTTGSSLNIAWE 78
           H  +AR H +L T    L + W+
Sbjct: 243 HHDNARPHTSLVTRQKLLELGWD 265


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 165 PNRSPKRTKGKRGTCKLTSFKSLCTKLILFPRNVQ 61
           P++  +R +   G C  TS    C K+    + VQ
Sbjct: 100 PDQLQERAQSVMGKCLPTSGSDNCNKIYNLAKCVQ 134


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 165 PNRSPKRTKGKRGTCKLTSFKSLCTKLILFPRNVQ 61
           P++  +R +   G C  TS    C K+    + VQ
Sbjct: 100 PDQLQERAQSVMGKCLPTSGSDNCNKIYNLAKCVQ 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,593
Number of Sequences: 438
Number of extensions: 2084
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)