Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1109
(378 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g53670.1 68414.m06107 transcription factor-related similar to... 29 1.0
At2g46920.2 68415.m05861 protein phosphatase 2C family protein /... 29 1.4
At2g46920.1 68415.m05860 protein phosphatase 2C family protein /... 29 1.4
At5g01060.1 68418.m00009 protein kinase family protein contains ... 27 3.1
At3g09000.1 68416.m01053 proline-rich family protein 27 4.1
At2g38410.1 68415.m04718 VHS domain-containing protein / GAT dom... 27 4.1
At3g57890.1 68416.m06453 tubulin-specific chaperone C-related co... 27 5.5
At5g60240.1 68418.m07551 expressed protein 26 7.2
At3g15450.1 68416.m01960 expressed protein similar to auxin down... 26 7.2
At1g16330.1 68414.m01954 cyclin family protein similar to SP|P25... 26 7.2
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 26 9.6
At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transfera... 26 9.6
At2g12405.1 68415.m01340 hypothetical protein 26 9.6
>At1g53670.1 68414.m06107 transcription factor-related similar to
pilin-like transcription factor [Homo sapiens]
GI:5059062; contains Pfam profile PF01641: SelR domain
Length = 202
Score = 29.1 bits (62), Expect = 1.0
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +2
Query: 233 TRLADRYTRTESGAGW---YQPFGLRAKTRV 316
T L D T+ +SG GW YQP G KT++
Sbjct: 119 TPLFDSSTKFDSGTGWPSYYQPIGNNVKTKL 149
>At2g46920.2 68415.m05861 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2c
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 856
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 230 QTRLADRYTRTESGAGWYQPFGLRAKTRVLWCV 328
++ LA ++R G W F L +TRV W V
Sbjct: 225 KSTLARTFSRRSGGLSWMHRFFLHPETRVSWAV 257
>At2g46920.1 68415.m05860 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2c
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 856
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 230 QTRLADRYTRTESGAGWYQPFGLRAKTRVLWCV 328
++ LA ++R G W F L +TRV W V
Sbjct: 225 KSTLARTFSRRSGGLSWMHRFFLHPETRVSWAV 257
>At5g01060.1 68418.m00009 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 499
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 195 VGLRRPASEKPNRSPKRTKGKRGTCKLTSFKSLCTK 88
+ ++RP S P++TK + KLT F C++
Sbjct: 326 INVKRPMSPPSKNLPEKTKPATESLKLTPFGDACSR 361
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 204 SQIVGLRRPASEKPNRSPKR--TKGKRGTCKLTS 109
S + GLRRP+S +RS R T +R T TS
Sbjct: 139 SSVAGLRRPSSSGSSRSTSRPATPTRRSTTPTTS 172
>At2g38410.1 68415.m04718 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate HRS
isoform 2 [Homo sapiens] GI:9022389; contains Pfam
profiles PF00790: VHS domain, PF03127: GAT domain
Length = 671
Score = 27.1 bits (57), Expect = 4.1
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = -2
Query: 365 HPRGAPGTRHPPERTKAPAS*LASRTADTSPHRSLSLYIDRRVASALSLPANFSAR*LAS 186
H A G+ P + + +P S AS+ AD+SP S + S+ +PA S
Sbjct: 312 HDAIASGSPLPVQASGSPLSVQASKPADSSPKSSEAKDSSSIAGSSSPIPATVSTGKSPI 371
Query: 185 DVQHQKSQ 162
D ++++ +
Sbjct: 372 DEEYEEEE 379
>At3g57890.1 68416.m06453 tubulin-specific chaperone C-related
contains weak similarity to Tubulin-specific chaperone C
(Tubulin-folding cofactor C) (CFC) (Swiss-Prot:Q15814)
[Homo sapiens]
Length = 573
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 373 PHNTPEALPARGTRPNAPKHPRLSSQAERLIP 278
P + P+ P T PN+ HPR S L+P
Sbjct: 13 PPSAPDPEPNSSTNPNSVIHPRRVSFEHGLLP 44
>At5g60240.1 68418.m07551 expressed protein
Length = 53
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 189 GQLSG*KISRQRERRRDSPIDIQGQ--RAVRA 278
G+L G + R RE +RDS + + G+ RA RA
Sbjct: 11 GELCGSEKRRDRELKRDSDLSLPGEDSRATRA 42
>At3g15450.1 68416.m01960 expressed protein similar to auxin
down-regulated protein ARG10 [Vigna radiata] GI:2970051,
wali7 (aluminum-induced protein) [Triticum aestivum]
GI:451193
Length = 253
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 338 HPPERTKAPAS*LASRTADTSPHRSLSLYIDRRVASALSLPANFSA 201
HPPE +PAS + +T P +LS ++ +A S+ SA
Sbjct: 11 HPPEELNSPASHFSGKTPKL-PGETLSDFLSHHQNNAFSMNFGDSA 55
>At1g16330.1 68414.m01954 cyclin family protein similar to SP|P25011
G2/mitotic-specific cyclin S13-6 (B-like cyclin)
{Glycine max}; contains Pfam profiles PF00134: Cyclin,
N-terminal domain, PF02984: Cyclin, C-terminal domain
Length = 396
Score = 26.2 bits (55), Expect = 7.2
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -2
Query: 278 SPHRSLSLYIDRRVASALSLPANFSAR*LASDVQHQKSQIDHQKEP 141
S RS+S VAS LSLP + L D Q + S K+P
Sbjct: 42 SKSRSISSIPSSAVASTLSLPEKVETKCLEEDTQGESSS-SGNKDP 86
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 25.8 bits (54), Expect = 9.6
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = -3
Query: 328 NAPKHPRLSSQAERLIPARTALCPCISIGESRLRSRCRLIFQPDSWPQTSSIRKAK*ITK 149
NA + LS QAE PAR P ++ S L R ++ Q + AK +T
Sbjct: 31 NASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTD 90
Query: 148 KNQGQTR 128
+ G ++
Sbjct: 91 RVSGYSK 97
>At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase ;similar
to UDP-glucose:anthocyanin 5-O-glucosyltransferase
GI:4115563 from [Verbena x hybrida]
Length = 456
Score = 25.8 bits (54), Expect = 9.6
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 86 NFVHKLLNDVS-LHVPRLPLVLFGDLFGFSDAGRLRPT 196
N +K L DV + +P+LPL+ GDL F + P+
Sbjct: 156 NTSYKHLFDVEPIKLPKLPLITTGDLPSFLQPSKALPS 193
>At2g12405.1 68415.m01340 hypothetical protein
Length = 116
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/53 (22%), Positives = 24/53 (45%)
Frame = +3
Query: 21 CTCTR*PQHDWFITEHCVGIKLILYTNF*MMSVCMYLVCPWFFLVIYLAFLML 179
C+C+ WF + V +K I+ ++F + L W ++ L F ++
Sbjct: 5 CSCSNWNVATWFFSGMAVDLKFIMRSSFLRLLSFDALCIGWIGFLVVLGFFVV 57
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,449,557
Number of Sequences: 28952
Number of extensions: 165380
Number of successful extensions: 454
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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