Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1107
(569 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q12874 Cluster: Splicing factor 3A subunit 3; n=31; Bil... 130 2e-29
UniRef50_A7T279 Cluster: Predicted protein; n=1; Nematostella ve... 113 4e-24
UniRef50_Q6TUF1 Cluster: LRRGT00093; n=3; Eutheria|Rep: LRRGT000... 105 1e-21
UniRef50_Q22469 Cluster: Putative uncharacterized protein; n=5; ... 89 9e-17
UniRef50_Q16EE4 Cluster: Splicing factor 3a; n=2; Culicidae|Rep:... 78 2e-13
UniRef50_A4QU30 Cluster: Putative uncharacterized protein; n=1; ... 63 5e-09
UniRef50_Q9FG01 Cluster: Splicing factor 3a; n=6; Magnoliophyta|... 60 5e-08
UniRef50_Q55CK7 Cluster: C2H2 type Zn finger-containing protein;... 52 7e-06
UniRef50_O59706 Cluster: U2 snRNP-associated protein sap61; n=1;... 52 1e-05
UniRef50_Q7R8D2 Cluster: Splicing factor 3a subunit 3; n=1; Plas... 45 0.001
UniRef50_Q5KJJ3 Cluster: RNA splicing factor PRP9, putative; n=1... 44 0.003
UniRef50_UPI00006CFDC8 Cluster: splicesome-associated protein, p... 42 0.008
UniRef50_A0DLK5 Cluster: Chromosome undetermined scaffold_55, wh... 41 0.018
UniRef50_Q4P183 Cluster: Putative uncharacterized protein; n=1; ... 40 0.041
UniRef50_UPI0000498796 Cluster: zinc finger protein; n=1; Entamo... 35 1.2
UniRef50_Q9VB72 Cluster: CG5882-PA; n=2; Sophophora|Rep: CG5882-... 35 1.2
UniRef50_A5K6W2 Cluster: Splicesome-associated protein, putative... 30 1.4
UniRef50_A5DIK7 Cluster: Putative uncharacterized protein; n=1; ... 34 2.7
UniRef50_A5DJG0 Cluster: Putative uncharacterized protein; n=1; ... 33 6.2
UniRef50_A4FW47 Cluster: Putative uncharacterized protein; n=4; ... 33 6.2
UniRef50_Q3JW66 Cluster: Putative uncharacterized protein; n=4; ... 32 8.2
UniRef50_A3ZNH4 Cluster: Uridylyltransferase/uridylyl-removing e... 32 8.2
UniRef50_Q0J6M3 Cluster: Os08g0296900 protein; n=6; Oryza sativa... 32 8.2
UniRef50_Q9UZC8 Cluster: DNA double-strand break repair rad50 AT... 32 8.2
>UniRef50_Q12874 Cluster: Splicing factor 3A subunit 3; n=31;
Bilateria|Rep: Splicing factor 3A subunit 3 - Homo
sapiens (Human)
Length = 501
Score = 130 bits (314), Expect = 2e-29
Identities = 58/87 (66%), Positives = 74/87 (85%)
Frame = +1
Query: 292 MVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEF 471
M KE+L KK+ R+ IN+DHR + + DRY+E S L++L++DKDGLRKEE++A+SGP+EF
Sbjct: 22 MAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEF 81
Query: 472 QEFYSRLKQIKEFHRKHPNEISVPMSV 552
EFY+RLKQIKEFHRKHPNEI VPMSV
Sbjct: 82 AEFYNRLKQIKEFHRKHPNEICVPMSV 108
Score = 37.5 bits (83), Expect = 0.22
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3
Query: 228 METILEQQRSYHEERERTM 284
METILEQQR YHEE+ER M
Sbjct: 1 METILEQQRRYHEEKERLM 19
>UniRef50_A7T279 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 365
Score = 113 bits (271), Expect = 4e-24
Identities = 51/93 (54%), Positives = 71/93 (76%)
Frame = +1
Query: 289 AMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHE 468
AM +EILHK + INADHR +NL +R + A+ + L+ED+DGLRKEE+S+LSGP+E
Sbjct: 21 AMSQEILHKISRKATQINADHRTRNLLERSVIAAESMANLYEDQDGLRKEEVSSLSGPNE 80
Query: 469 FQEFYSRLKQIKEFHRKHPNEISVPMSVRI*RV 567
F EFYSRL+ +KE+HRK+PNE++ PM + R+
Sbjct: 81 FAEFYSRLRSLKEYHRKYPNEVTEPMQMEFLRM 113
Score = 33.9 bits (74), Expect = 2.7
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +3
Query: 228 METILEQQRSYHEERER 278
METILEQQR HEERER
Sbjct: 1 METILEQQRRLHEERER 17
>UniRef50_Q6TUF1 Cluster: LRRGT00093; n=3; Eutheria|Rep: LRRGT00093
- Rattus norvegicus (Rat)
Length = 230
Score = 105 bits (251), Expect = 1e-21
Identities = 48/81 (59%), Positives = 61/81 (75%)
Frame = +1
Query: 310 HKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEFQEFYSR 489
H++ + A L RY+E S L++L++DKDGLRKEE++A+SGP+EF EFY+R
Sbjct: 12 HEEKERLMDVMAKEMLTKKSTRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNR 71
Query: 490 LKQIKEFHRKHPNEISVPMSV 552
LKQIKEFHRKHPNEI VPMSV
Sbjct: 72 LKQIKEFHRKHPNEICVPMSV 92
Score = 37.5 bits (83), Expect = 0.22
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3
Query: 228 METILEQQRSYHEERERTM 284
METILEQQR YHEE+ER M
Sbjct: 1 METILEQQRRYHEEKERLM 19
>UniRef50_Q22469 Cluster: Putative uncharacterized protein; n=5;
Bilateria|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 500
Score = 88.6 bits (210), Expect = 9e-17
Identities = 37/91 (40%), Positives = 63/91 (69%)
Frame = +1
Query: 295 VKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEFQ 474
VKE + +K H+ +N++ R+K DRY S L + ++D+DG + E+ ++SGP+EF
Sbjct: 23 VKEKIAEKLTHKAKVNSEQRVKTFVDRYYSVSAELAKFYKDEDGSKSMEMDSVSGPNEFA 82
Query: 475 EFYSRLKQIKEFHRKHPNEISVPMSVRI*RV 567
EFYSRLK IK+ HR++P+E++ P++V ++
Sbjct: 83 EFYSRLKVIKDAHRRNPDELAEPLTVEFQKI 113
>UniRef50_Q16EE4 Cluster: Splicing factor 3a; n=2; Culicidae|Rep:
Splicing factor 3a - Aedes aegypti (Yellowfever
mosquito)
Length = 484
Score = 77.8 bits (183), Expect = 2e-13
Identities = 37/88 (42%), Positives = 58/88 (65%)
Frame = +1
Query: 289 AMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHE 468
AM +E+ K ++ + ADHR+K +RY S L EL++DKDG RK+EI+ +S +E
Sbjct: 21 AMSEELQTPKKTTKDKVLADHRIKIYLERYQSCSKSLLELYQDKDGERKQEITNMS-VNE 79
Query: 469 FQEFYSRLKQIKEFHRKHPNEISVPMSV 552
F+EFYS+ + EFH+ H N +++P S+
Sbjct: 80 FKEFYSQFNSLVEFHQNHGNNVAIPASI 107
>UniRef50_A4QU30 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 521
Score = 62.9 bits (146), Expect = 5e-09
Identities = 28/74 (37%), Positives = 45/74 (60%)
Frame = +1
Query: 310 HKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEFQEFYSR 489
H+ T R+ +N DH + L ++ + S L ++ED +GLR +EI A+ F EFY +
Sbjct: 26 HEPTFIRDRLNRDHEVAQLLEQIQKQSSELISMYEDVNGLRSKEIQAIGSGDPFDEFYKQ 85
Query: 490 LKQIKEFHRKHPNE 531
+++IKE H K+P E
Sbjct: 86 VEEIKEHHAKYPTE 99
>UniRef50_Q9FG01 Cluster: Splicing factor 3a; n=6;
Magnoliophyta|Rep: Splicing factor 3a - Arabidopsis
thaliana (Mouse-ear cress)
Length = 504
Score = 59.7 bits (138), Expect = 5e-08
Identities = 27/84 (32%), Positives = 54/84 (64%), Gaps = 5/84 (5%)
Frame = +1
Query: 292 MVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISAL-----S 456
+V+++ + ++ + HR++++ + + + +L E +EDKDG +EI+AL +
Sbjct: 23 VVEDLQKEPPSSKDRLVQGHRVRHMIESIMLTTEKLVETYEDKDGAWDDEIAALGGQTAT 82
Query: 457 GPHEFQEFYSRLKQIKEFHRKHPN 528
G + F EFY RLK+I+E+H++HP+
Sbjct: 83 GTNVFSEFYDRLKEIREYHKRHPS 106
>UniRef50_Q55CK7 Cluster: C2H2 type Zn finger-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: C2H2 type Zn
finger-containing protein - Dictyostelium discoideum AX4
Length = 544
Score = 52.4 bits (120), Expect = 7e-06
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Frame = +1
Query: 328 RETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSG--PHEFQEFYSRLKQI 501
+E + HR+ + + IE S L ++ D D RK+E++++SG + FY +L++I
Sbjct: 35 KERVLQSHRVNHYLNSSIECSKSLINIYTDSDHSRKDELTSISGFGTDLYSSFYEKLREI 94
Query: 502 KEFHRKHPN 528
K++HRK PN
Sbjct: 95 KDYHRKFPN 103
>UniRef50_O59706 Cluster: U2 snRNP-associated protein sap61; n=1;
Schizosaccharomyces pombe|Rep: U2 snRNP-associated
protein sap61 - Schizosaccharomyces pombe (Fission
yeast)
Length = 492
Score = 52.0 bits (119), Expect = 1e-05
Identities = 21/67 (31%), Positives = 40/67 (59%)
Frame = +1
Query: 328 RETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 507
RE + +H+ +++ E S +L HE D L+ +E++ ++ + EFY L +I+E
Sbjct: 35 RERLRLEHQSAQFLNQFRETSKKLLVSHESSDRLKDQEVARINADDDLTEFYKSLGEIQE 94
Query: 508 FHRKHPN 528
FH+K+P+
Sbjct: 95 FHKKYPD 101
>UniRef50_Q7R8D2 Cluster: Splicing factor 3a subunit 3; n=1;
Plasmodium yoelii yoelii|Rep: Splicing factor 3a subunit
3 - Plasmodium yoelii yoelii
Length = 585
Score = 44.8 bits (101), Expect = 0.001
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Frame = +1
Query: 295 VKEILHKKT-GHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHE- 468
+ E+++ K +++ I D+ + L ++ S +L E+++D D L+KEEI +SG
Sbjct: 23 IAELINDKVKNNKKHIFYDYCINYLVEKIQNKSKQLVEIYKDDDNLKKEEIQFISGKTNE 82
Query: 469 ----FQEFYSRLKQIKEFHRK 519
++ +Y R+K IK++H+K
Sbjct: 83 ENDVWKNYYERIKYIKDYHKK 103
>UniRef50_Q5KJJ3 Cluster: RNA splicing factor PRP9, putative; n=1;
Filobasidiella neoformans|Rep: RNA splicing factor PRP9,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 513
Score = 43.6 bits (98), Expect = 0.003
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +1
Query: 289 AMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGP-- 462
A+ + ++ T + + D + + R L E +ED GLR E++ LS P
Sbjct: 21 ALAEVLMQNPTATKNVVRRDRKAAEILGRIGTLRKELVEQYEDIPGLRPRELALLSAPAP 80
Query: 463 --HEFQEFYSRLKQIKEFHRKH 522
+ EFY+R +IK+FH ++
Sbjct: 81 GEDDLAEFYTRFNKIKDFHSRN 102
>UniRef50_UPI00006CFDC8 Cluster: splicesome-associated protein,
putative; n=1; Tetrahymena thermophila SB210|Rep:
splicesome-associated protein, putative - Tetrahymena
thermophila SB210
Length = 521
Score = 42.3 bits (95), Expect = 0.008
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 10/78 (12%)
Frame = +1
Query: 328 RETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSG----------PHEFQE 477
++ + D++LKNL + + L +D DG++KEE++ L G P +
Sbjct: 35 KDQVIIDNKLKNLIEMKQSKCMDALILLQDFDGVKKEEMAILEGKKSVSAGTRQPDIWYN 94
Query: 478 FYSRLKQIKEFHRKHPNE 531
F RLK IKE+++KH N+
Sbjct: 95 FQQRLKDIKEYYKKHQNQ 112
>UniRef50_A0DLK5 Cluster: Chromosome undetermined scaffold_55, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_55,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 491
Score = 41.1 bits (92), Expect = 0.018
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = +1
Query: 313 KKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGP----HEFQEF 480
+KT + DHR+ NL + + L + DG +KEE++ L G ++ F
Sbjct: 20 EKTHRYSAVLLDHRIHNLIQMAQKTAADALILIDGADGWKKEEMNYLQGVGGSGDVWENF 79
Query: 481 YSRLKQIKEFHRKHPN 528
Y R K+IK++H++ N
Sbjct: 80 YERFKEIKDYHKRVAN 95
>UniRef50_Q4P183 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 565
Score = 39.9 bits (89), Expect = 0.041
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +1
Query: 325 HRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHE---FQEFYSRLK 495
H++ + H +L DR L + D+ R+ E+ +LS EFY RL
Sbjct: 40 HKDKLKRAHEASDLLDRVTSRYQYLDRFYTDEHQERQRELESLSSARADDALGEFYERLA 99
Query: 496 QIKEFHRKHPNEI 534
+++E+H K+P +
Sbjct: 100 RVREYHDKYPGAL 112
>UniRef50_UPI0000498796 Cluster: zinc finger protein; n=1; Entamoeba
histolytica HM-1:IMSS|Rep: zinc finger protein -
Entamoeba histolytica HM-1:IMSS
Length = 460
Score = 35.1 bits (77), Expect = 1.2
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +1
Query: 292 MVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEF 471
+V+ I ++ + I +H + L+ + + L L+EDK+G ++EE+ +SG
Sbjct: 21 IVRRIKNQPVLQEDKIKNEHIIMKLNHEINQRTGELISLYEDKNGKKEEELQMISGNGNT 80
Query: 472 QE----FYSRLKQIK-EFHRK 519
+ FY ++QIK EF K
Sbjct: 81 TDLLKIFYQGIEQIKNEFKGK 101
>UniRef50_Q9VB72 Cluster: CG5882-PA; n=2; Sophophora|Rep: CG5882-PA
- Drosophila melanogaster (Fruit fly)
Length = 866
Score = 35.1 bits (77), Expect = 1.2
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +1
Query: 238 F*SNNEATMRKGKEPWHAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHED 417
F NNE ++ + E + + + A H ++ L D +LK+L+ED
Sbjct: 371 FEKNNENLTKERDSLRRELQAEHHQLEQSNAQHQEAQHEVRALKDTITTMDTKLKKLNED 430
Query: 418 KDGLRKEEISALSGPHEFQEFYSRLKQIK-EFHRKHPNEISVPMSV 552
+ L+KE+ L E Q + +L ++ E H K EI + ++
Sbjct: 431 ANKLKKEKTKKLD---EIQHWIDKLDALQNEMHLKENYEIELKRTI 473
>UniRef50_A5K6W2 Cluster: Splicesome-associated protein, putative;
n=8; Eukaryota|Rep: Splicesome-associated protein,
putative - Plasmodium vivax
Length = 631
Score = 30.3 bits (65), Expect(2) = 1.4
Identities = 16/56 (28%), Positives = 32/56 (57%)
Frame = +1
Query: 292 MVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSG 459
+++E + KK + I D+ + L ++ S L + + D+DGL++EE+ +SG
Sbjct: 26 LIEEKVRKK--RKRGIRYDYSISYLVEKIQSKSRLLLQYYGDEDGLKREEMQFISG 79
Score = 23.4 bits (48), Expect(2) = 1.4
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +1
Query: 469 FQEFYSRLKQIKEFHRK 519
++ +Y R+K I+++H+K
Sbjct: 120 WKNYYERVKYIRDYHKK 136
>UniRef50_A5DIK7 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 507
Score = 33.9 bits (74), Expect = 2.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 339 YSLPMPSFFVKNFFDHCVPWFFPFPHGSFV 250
Y +P P +V N + PW P+PH FV
Sbjct: 381 YMVPFPESYVYNPYVEAEPWSMPYPHAPFV 410
>UniRef50_A5DJG0 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 1951
Score = 32.7 bits (71), Expect = 6.2
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 367 HDRYIEASIRLKELHEDKDGLRKEEISALSGPHE--FQEFYSRLKQIKEFHRKHPNEISV 540
H + + A E +E K+ L KEEI + HE F+E S + +++F+ + +EI +
Sbjct: 972 HAQVVNALKSKIEANETKNNLLKEEIKRMKDDHERGFRESKSEMSDLEQFNTQLKDEIEL 1031
Query: 541 PMS 549
S
Sbjct: 1032 HKS 1034
>UniRef50_A4FW47 Cluster: Putative uncharacterized protein; n=4;
Methanococcus|Rep: Putative uncharacterized protein -
Methanococcus maripaludis
Length = 245
Score = 32.7 bits (71), Expect = 6.2
Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Frame = +3
Query: 105 IFCMLPYIFSHNLNF--KIINHYFNIIVFYKVIDI 203
+F +LPYI++ +++ IN YFN+++F+ V+ I
Sbjct: 96 VFILLPYIYTRDISKGKSTINDYFNVLLFFYVLII 130
>UniRef50_Q3JW66 Cluster: Putative uncharacterized protein; n=4;
Burkholderia|Rep: Putative uncharacterized protein -
Burkholderia pseudomallei (strain 1710b)
Length = 882
Score = 32.3 bits (70), Expect = 8.2
Identities = 24/86 (27%), Positives = 40/86 (46%)
Frame = +1
Query: 250 NEATMRKGKEPWHAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGL 429
+E R+ EP HA + L R +A+HR HD + R + H +DGL
Sbjct: 685 DERRAREAVEP-HADARPALEPHAD-RARADAEHRE---HDGRLRHEQRAQLEHLQRDGL 739
Query: 430 RKEEISALSGPHEFQEFYSRLKQIKE 507
R I L H+ ++ + R++Q+ +
Sbjct: 740 RAVRIDELRQEHDEEQRHLRIQQVAD 765
>UniRef50_A3ZNH4 Cluster: Uridylyltransferase/uridylyl-removing
enzyme glnD; n=1; Blastopirellula marina DSM 3645|Rep:
Uridylyltransferase/uridylyl-removing enzyme glnD -
Blastopirellula marina DSM 3645
Length = 882
Score = 32.3 bits (70), Expect = 8.2
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Frame = +1
Query: 313 KKTGHRETINADHRLKNLHDRYIE----ASIRLK-----ELHEDKDGLRKEEISALSGPH 465
+K+GH I L NL+DR+I+ SIRL+ E+ D +G RK +S +S P
Sbjct: 359 EKSGHVSEILRLMDLANLYDRWIDHPTWESIRLRMQTIGEIELDDEG-RKRFLSIMSHPP 417
Query: 466 EFQEFYSRLKQI 501
E SRL ++
Sbjct: 418 RLGEVLSRLNEL 429
>UniRef50_Q0J6M3 Cluster: Os08g0296900 protein; n=6; Oryza
sativa|Rep: Os08g0296900 protein - Oryza sativa subsp.
japonica (Rice)
Length = 831
Score = 32.3 bits (70), Expect = 8.2
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 265 RKGKEPWHAMVKEILH---KKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRK 435
+ GK H+ K+I KK H H +N H+RY E S+ +KE +D +
Sbjct: 324 KNGKPGKHSAGKKIRRADAKKQKHSAMEPVHHAEENRHERYTETSVHVKEAMKDLKLVFG 383
Query: 436 EEISALSGP 462
E+I P
Sbjct: 384 EDIRCAQMP 392
>UniRef50_Q9UZC8 Cluster: DNA double-strand break repair rad50
ATPase; n=2; Pyrococcus|Rep: DNA double-strand break
repair rad50 ATPase - Pyrococcus abyssi
Length = 880
Score = 32.3 bits (70), Expect = 8.2
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 253 EATMRKGKEPWHAMVKEILHKKTGHRETINAD-HRLKNLHDRYIEASIRLKELHEDKDGL 429
E +RK KE + +++ E +N L+ HD+Y+EA EL E K+ L
Sbjct: 563 EEKVRKAKEELENLHRQLRELGFESVEELNLRIQELEEFHDKYVEAKKSESELRELKNKL 622
Query: 430 RKEE 441
KE+
Sbjct: 623 EKEK 626
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 494,109,256
Number of Sequences: 1657284
Number of extensions: 9168917
Number of successful extensions: 28223
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 27129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28204
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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