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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1107
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    52   6e-08
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   1.5  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    27   1.9  
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   3.4  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    26   4.5  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.5  
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.5  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    26   4.5  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   5.9  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   5.9  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.8  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    25   7.8  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   7.8  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    25   7.8  

>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 52.0 bits (119), Expect = 6e-08
 Identities = 21/67 (31%), Positives = 40/67 (59%)
 Frame = +1

Query: 328 RETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 507
           RE +  +H+     +++ E S +L   HE  D L+ +E++ ++   +  EFY  L +I+E
Sbjct: 35  RERLRLEHQSAQFLNQFRETSKKLLVSHESSDRLKDQEVARINADDDLTEFYKSLGEIQE 94

Query: 508 FHRKHPN 528
           FH+K+P+
Sbjct: 95  FHKKYPD 101


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +1

Query: 337 INADHRLKNLHDRYIEASIRLKELHEDKDGLRKEE--ISALSGPHEFQEFYSRLKQIKEF 510
           ++  HR     D      IRLK+       L++E+      +   + + F ++LK I+ F
Sbjct: 416 VDFSHRTAVSSDILSLCYIRLKDFLRISGSLKEEQSYYGLKNSIKQIKAFENKLKYIQSF 475

Query: 511 HRKH 522
           H KH
Sbjct: 476 HEKH 479


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 268 KGKEPWHAMVKEILHKKTGHRETINADHRLKNLHDRYIEASI-RLKELHEDKDGLRK 435
           +   P HA+   +L    G ++ +   H   N+H RY+E  +  L  LH    G +K
Sbjct: 778 RSPSPLHALFLALL---LGIKDLMTLYHTTVNIHQRYLEKGLMNLGHLHLTLSGSKK 831


>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 487 SNRTPGTHVVLTMLIFLLFVIHLYLH 410
           S+R PG   +L+  + L++ +HL+L+
Sbjct: 213 SSRKPGASQILSSKVQLMYYVHLFLN 238


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 494 SKLKSFIENIQMKYLYPCLSEFE 562
           S +  F++NI  + LYP LS+++
Sbjct: 114 SLIFEFVDNIDFRTLYPTLSDYD 136


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 240 LEQQRSYHEERERTMARNGQRNSSQKNW 323
           L QQ+ YHE +++ + +   +N  +K++
Sbjct: 41  LLQQKEYHESKKKEIKKGNLKNKKKKDY 68


>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 355 LKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRK 519
           L+NL +   E   +LKEL + +  L KEE   L   +   +  S+ K++K  + K
Sbjct: 22  LQNLKE---ETENQLKELEKKRSQLHKEEQINLQLVYAINDLRSKTKELKAENEK 73


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +1

Query: 304 ILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPH--EFQE 477
           I++ +   RE +N   R +    + +EA    +E  E+K        S++SG H  EF E
Sbjct: 184 IINMRACLREPLNRIARQQEAAQKLVEALEGAQEEIENKSVSGNTNSSSVSGNHAAEFLE 243

Query: 478 FYSRLKQ 498
           +   LK+
Sbjct: 244 YVESLKK 250


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 289 AMVKEILHKKTGHRETINADHRLKN 363
           ++ K  LHK T H  T  + H  KN
Sbjct: 22  SLYKRRLHKSTSHSSTATSSHYSKN 46


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 443 YQHCQDHMSSRSSIRDLSKLKSFIENIQMKY 535
           +Q      +  SSI+DL   + F+EN++ +Y
Sbjct: 70  FQKLLQEKTPLSSIQDLEGFREFMENLEHRY 100


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 301 EILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHE 414
           E+  + T  +E    + ++K LHD   +   ++KEL E
Sbjct: 135 EVTSRSTSSQEKDELEKQVKTLHDLNEQKDKKIKELKE 172


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/40 (25%), Positives = 25/40 (62%), Gaps = 7/40 (17%)
 Frame = +3

Query: 102 SIFCMLPYIFSHNLNFKIINH-------YFNIIVFYKVID 200
           +IFC+  +IF++++   I++H       Y+N+++   ++D
Sbjct: 287 TIFCLNAFIFAYSVGVVIVSHITESPFPYWNVLILPFLVD 326


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/72 (19%), Positives = 31/72 (43%)
 Frame = +1

Query: 298 KEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEFQE 477
           K++      H+E   A HR +   D+Y+      K  +  +  +   +IS      +F  
Sbjct: 660 KQLKSLTKNHQEIEKAIHRKERQRDQYMSQEEDSKLFNRSRVSIDSFKISKEENTPDFAV 719

Query: 478 FYSRLKQIKEFH 513
           +  R+++++  H
Sbjct: 720 YTIRIERLENGH 731


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 400 KELHEDKDGLRKEEISALSGPHEFQEFYSR 489
           KE  +++D L+KEE   +  P EF+ F  R
Sbjct: 314 KEGLDEQDNLQKEESVHIDVPAEFEAFDER 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,472
Number of Sequences: 5004
Number of extensions: 43136
Number of successful extensions: 155
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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