BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1107 (569 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 52 6e-08 SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.5 SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 27 1.9 SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p... 26 3.4 SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch... 26 4.5 SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.5 SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.5 SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 26 4.5 SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 5.9 SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 5.9 SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.8 SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg... 25 7.8 SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 25 7.8 SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 25 7.8 >SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccharomyces pombe|chr 2|||Manual Length = 492 Score = 52.0 bits (119), Expect = 6e-08 Identities = 21/67 (31%), Positives = 40/67 (59%) Frame = +1 Query: 328 RETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 507 RE + +H+ +++ E S +L HE D L+ +E++ ++ + EFY L +I+E Sbjct: 35 RERLRLEHQSAQFLNQFRETSKKLLVSHESSDRLKDQEVARINADDDLTEFYKSLGEIQE 94 Query: 508 FHRKHPN 528 FH+K+P+ Sbjct: 95 FHKKYPD 101 >SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccharomyces pombe|chr 1|||Manual Length = 4196 Score = 27.5 bits (58), Expect = 1.5 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +1 Query: 337 INADHRLKNLHDRYIEASIRLKELHEDKDGLRKEE--ISALSGPHEFQEFYSRLKQIKEF 510 ++ HR D IRLK+ L++E+ + + + F ++LK I+ F Sbjct: 416 VDFSHRTAVSSDILSLCYIRLKDFLRISGSLKEEQSYYGLKNSIKQIKAFENKLKYIQSF 475 Query: 511 HRKH 522 H KH Sbjct: 476 HEKH 479 >SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosaccharomyces pombe|chr 2|||Manual Length = 834 Score = 27.1 bits (57), Expect = 1.9 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = +1 Query: 268 KGKEPWHAMVKEILHKKTGHRETINADHRLKNLHDRYIEASI-RLKELHEDKDGLRK 435 + P HA+ +L G ++ + H N+H RY+E + L LH G +K Sbjct: 778 RSPSPLHALFLALL---LGIKDLMTLYHTTVNIHQRYLEKGLMNLGHLHLTLSGSKK 831 >SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 409 Score = 26.2 bits (55), Expect = 3.4 Identities = 9/26 (34%), Positives = 18/26 (69%) Frame = -2 Query: 487 SNRTPGTHVVLTMLIFLLFVIHLYLH 410 S+R PG +L+ + L++ +HL+L+ Sbjct: 213 SSRKPGASQILSSKVQLMYYVHLFLN 238 >SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Schizosaccharomyces pombe|chr 1|||Manual Length = 332 Score = 25.8 bits (54), Expect = 4.5 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = +2 Query: 494 SKLKSFIENIQMKYLYPCLSEFE 562 S + F++NI + LYP LS+++ Sbjct: 114 SLIFEFVDNIDFRTLYPTLSDYD 136 >SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 231 Score = 25.8 bits (54), Expect = 4.5 Identities = 8/28 (28%), Positives = 18/28 (64%) Frame = +3 Query: 240 LEQQRSYHEERERTMARNGQRNSSQKNW 323 L QQ+ YHE +++ + + +N +K++ Sbjct: 41 LLQQKEYHESKKKEIKKGNLKNKKKKDY 68 >SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 261 Score = 25.8 bits (54), Expect = 4.5 Identities = 17/55 (30%), Positives = 28/55 (50%) Frame = +1 Query: 355 LKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRK 519 L+NL + E +LKEL + + L KEE L + + S+ K++K + K Sbjct: 22 LQNLKE---ETENQLKELEKKRSQLHKEEQINLQLVYAINDLRSKTKELKAENEK 73 >SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 730 Score = 25.8 bits (54), Expect = 4.5 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Frame = +1 Query: 304 ILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPH--EFQE 477 I++ + RE +N R + + +EA +E E+K S++SG H EF E Sbjct: 184 IINMRACLREPLNRIARQQEAAQKLVEALEGAQEEIENKSVSGNTNSSSVSGNHAAEFLE 243 Query: 478 FYSRLKQ 498 + LK+ Sbjct: 244 YVESLKK 250 >SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 314 Score = 25.4 bits (53), Expect = 5.9 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = +1 Query: 289 AMVKEILHKKTGHRETINADHRLKN 363 ++ K LHK T H T + H KN Sbjct: 22 SLYKRRLHKSTSHSSTATSSHYSKN 46 >SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 750 Score = 25.4 bits (53), Expect = 5.9 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = +2 Query: 443 YQHCQDHMSSRSSIRDLSKLKSFIENIQMKY 535 +Q + SSI+DL + F+EN++ +Y Sbjct: 70 FQKLLQEKTPLSSIQDLEGFREFMENLEHRY 100 >SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 395 Score = 25.0 bits (52), Expect = 7.8 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = +1 Query: 301 EILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHE 414 E+ + T +E + ++K LHD + ++KEL E Sbjct: 135 EVTSRSTSSQEKDELEKQVKTLHDLNEQKDKKIKELKE 172 >SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylglycerol ethanolaminesphotranferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 386 Score = 25.0 bits (52), Expect = 7.8 Identities = 10/40 (25%), Positives = 25/40 (62%), Gaps = 7/40 (17%) Frame = +3 Query: 102 SIFCMLPYIFSHNLNFKIINH-------YFNIIVFYKVID 200 +IFC+ +IF++++ I++H Y+N+++ ++D Sbjct: 287 TIFCLNAFIFAYSVGVVIVSHITESPFPYWNVLILPFLVD 326 >SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1010 Score = 25.0 bits (52), Expect = 7.8 Identities = 14/72 (19%), Positives = 31/72 (43%) Frame = +1 Query: 298 KEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEFQE 477 K++ H+E A HR + D+Y+ K + + + +IS +F Sbjct: 660 KQLKSLTKNHQEIEKAIHRKERQRDQYMSQEEDSKLFNRSRVSIDSFKISKEENTPDFAV 719 Query: 478 FYSRLKQIKEFH 513 + R+++++ H Sbjct: 720 YTIRIERLENGH 731 >SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces pombe|chr 2|||Manual Length = 478 Score = 25.0 bits (52), Expect = 7.8 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +1 Query: 400 KELHEDKDGLRKEEISALSGPHEFQEFYSR 489 KE +++D L+KEE + P EF+ F R Sbjct: 314 KEGLDEQDNLQKEESVHIDVPAEFEAFDER 343 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,183,472 Number of Sequences: 5004 Number of extensions: 43136 Number of successful extensions: 155 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 147 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 155 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 242064240 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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