Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1107
(569 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 52 6e-08
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.5
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 27 1.9
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p... 26 3.4
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch... 26 4.5
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.5
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.5
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 26 4.5
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 5.9
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 5.9
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.8
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg... 25 7.8
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 25 7.8
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 25 7.8
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 52.0 bits (119), Expect = 6e-08
Identities = 21/67 (31%), Positives = 40/67 (59%)
Frame = +1
Query: 328 RETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 507
RE + +H+ +++ E S +L HE D L+ +E++ ++ + EFY L +I+E
Sbjct: 35 RERLRLEHQSAQFLNQFRETSKKLLVSHESSDRLKDQEVARINADDDLTEFYKSLGEIQE 94
Query: 508 FHRKHPN 528
FH+K+P+
Sbjct: 95 FHKKYPD 101
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 1.5
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 337 INADHRLKNLHDRYIEASIRLKELHEDKDGLRKEE--ISALSGPHEFQEFYSRLKQIKEF 510
++ HR D IRLK+ L++E+ + + + F ++LK I+ F
Sbjct: 416 VDFSHRTAVSSDILSLCYIRLKDFLRISGSLKEEQSYYGLKNSIKQIKAFENKLKYIQSF 475
Query: 511 HRKH 522
H KH
Sbjct: 476 HEKH 479
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 268 KGKEPWHAMVKEILHKKTGHRETINADHRLKNLHDRYIEASI-RLKELHEDKDGLRK 435
+ P HA+ +L G ++ + H N+H RY+E + L LH G +K
Sbjct: 778 RSPSPLHALFLALL---LGIKDLMTLYHTTVNIHQRYLEKGLMNLGHLHLTLSGSKK 831
>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 3.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2
Query: 487 SNRTPGTHVVLTMLIFLLFVIHLYLH 410
S+R PG +L+ + L++ +HL+L+
Sbjct: 213 SSRKPGASQILSSKVQLMYYVHLFLN 238
>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
Cka1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 25.8 bits (54), Expect = 4.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 494 SKLKSFIENIQMKYLYPCLSEFE 562
S + F++NI + LYP LS+++
Sbjct: 114 SLIFEFVDNIDFRTLYPTLSDYD 136
>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 231
Score = 25.8 bits (54), Expect = 4.5
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +3
Query: 240 LEQQRSYHEERERTMARNGQRNSSQKNW 323
L QQ+ YHE +++ + + +N +K++
Sbjct: 41 LLQQKEYHESKKKEIKKGNLKNKKKKDY 68
>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 25.8 bits (54), Expect = 4.5
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 355 LKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRK 519
L+NL + E +LKEL + + L KEE L + + S+ K++K + K
Sbjct: 22 LQNLKE---ETENQLKELEKKRSQLHKEEQINLQLVYAINDLRSKTKELKAENEK 73
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 25.8 bits (54), Expect = 4.5
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +1
Query: 304 ILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPH--EFQE 477
I++ + RE +N R + + +EA +E E+K S++SG H EF E
Sbjct: 184 IINMRACLREPLNRIARQQEAAQKLVEALEGAQEEIENKSVSGNTNSSSVSGNHAAEFLE 243
Query: 478 FYSRLKQ 498
+ LK+
Sbjct: 244 YVESLKK 250
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 289 AMVKEILHKKTGHRETINADHRLKN 363
++ K LHK T H T + H KN
Sbjct: 22 SLYKRRLHKSTSHSSTATSSHYSKN 46
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 443 YQHCQDHMSSRSSIRDLSKLKSFIENIQMKY 535
+Q + SSI+DL + F+EN++ +Y
Sbjct: 70 FQKLLQEKTPLSSIQDLEGFREFMENLEHRY 100
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 301 EILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHE 414
E+ + T +E + ++K LHD + ++KEL E
Sbjct: 135 EVTSRSTSSQEKDELEKQVKTLHDLNEQKDKKIKELKE 172
>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
diacylglycerol ethanolaminesphotranferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 386
Score = 25.0 bits (52), Expect = 7.8
Identities = 10/40 (25%), Positives = 25/40 (62%), Gaps = 7/40 (17%)
Frame = +3
Query: 102 SIFCMLPYIFSHNLNFKIINH-------YFNIIVFYKVID 200
+IFC+ +IF++++ I++H Y+N+++ ++D
Sbjct: 287 TIFCLNAFIFAYSVGVVIVSHITESPFPYWNVLILPFLVD 326
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 7.8
Identities = 14/72 (19%), Positives = 31/72 (43%)
Frame = +1
Query: 298 KEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEFQE 477
K++ H+E A HR + D+Y+ K + + + +IS +F
Sbjct: 660 KQLKSLTKNHQEIEKAIHRKERQRDQYMSQEEDSKLFNRSRVSIDSFKISKEENTPDFAV 719
Query: 478 FYSRLKQIKEFH 513
+ R+++++ H
Sbjct: 720 YTIRIERLENGH 731
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 400 KELHEDKDGLRKEEISALSGPHEFQEFYSR 489
KE +++D L+KEE + P EF+ F R
Sbjct: 314 KEGLDEQDNLQKEESVHIDVPAEFEAFDER 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,472
Number of Sequences: 5004
Number of extensions: 43136
Number of successful extensions: 155
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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