Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1107
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0077 - 11979497-11979654,11980012-11982178                       32   0.28 
04_04_0252 - 23935615-23936159,23936606-23936745,23936846-23937381     30   1.1  
11_06_0651 - 25899006-25899275                                         30   1.5  
05_05_0299 - 23930657-23932627                                         28   4.6  
04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692           28   6.0  
03_01_0027 - 250837-250877,250972-252909,253733-253805,254476-25...    27   8.0  

>08_02_0077 - 11979497-11979654,11980012-11982178
          Length = 774

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +1

Query: 265 RKGKEPWHAMVKEILH---KKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRK 435
           + GK   H+  K+I     KK  H       H  +N H+RY E S+ +KE  +D   +  
Sbjct: 267 KNGKPGKHSAGKKIRRADAKKQKHSAMEPVHHAEENRHERYTETSVHVKEAMKDLKLVFG 326

Query: 436 EEISALSGP 462
           E+I     P
Sbjct: 327 EDIRCAQMP 335


>04_04_0252 - 23935615-23936159,23936606-23936745,23936846-23937381
          Length = 406

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/65 (30%), Positives = 34/65 (52%)
 Frame = +1

Query: 334 TINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFH 513
           T+  D   K LH ++   S +L EL  + DGLRKE   +L    E+++  + +KQ+++  
Sbjct: 141 TVEMDKVTKELH-KFSGDSKKLPELLTELDGLRKEH-QSLRSAFEYEK-NTNIKQVEQMR 197

Query: 514 RKHPN 528
               N
Sbjct: 198 TMEMN 202


>11_06_0651 - 25899006-25899275
          Length = 89

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +1

Query: 286 HAMVK-EILHKKTGHRET-INADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALS 456
           H+++  EI H   G + + ++ADHR+ ++      A+   +  H   D LR+ E+S LS
Sbjct: 12  HSVISTEIPHSDLGEKASLVDADHRIGDVTRAPAAAAAEEEHGHYTSDLLRRAEVSKLS 70


>05_05_0299 - 23930657-23932627
          Length = 656

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 367 HDRYIEASIRLKELHEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 507
           H R++E S+R KE    +    KEE  A +   + +E    LK +K+
Sbjct: 322 HSRFVEGSVRKKESSRKQQRKNKEERIARAKQEQAEEL-KHLKNLKK 367


>04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692
          Length = 1171

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 401  KNCMKIKMDYEKKKYQHCQDHMSSRSSIRDLSKLKSFIENIQMK 532
            KN   + +  +K+K+  C D +S  SS+R L KL   +E +  +
Sbjct: 993  KNLESLSLQLDKEKHVVCWDDISPPSSVRSL-KLYGHVEMLSAR 1035


>03_01_0027 -
           250837-250877,250972-252909,253733-253805,254476-254555,
           255336-255595,255721-255785,256747-256839
          Length = 849

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 325 HRETINADHRLKNLHDRYIEASIRLKE-LHEDKDGLRKEEISALSGPHEFQEFYSRL 492
           H +T    HR KNLH +  E  I+L E L     GL + E + L   +  +E  S +
Sbjct: 728 HTQTEADLHRFKNLHSQLEEEVIKLTENLDRSTKGLEELENAKLDLENTSRELKSTI 784


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,558,932
Number of Sequences: 37544
Number of extensions: 227128
Number of successful extensions: 562
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)