Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1107
(569 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35649| Best HMM Match : M (HMM E-Value=6e-09) 31 0.50
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_34646| Best HMM Match : DUF1233 (HMM E-Value=3) 29 2.7
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_59156| Best HMM Match : FlaC_arch (HMM E-Value=0.77) 28 4.7
SB_5674| Best HMM Match : FlaC_arch (HMM E-Value=0.97) 28 4.7
SB_58659| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_51163| Best HMM Match : Adeno_PIX (HMM E-Value=0.96) 28 6.2
SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_9880| Best HMM Match : FlaC_arch (HMM E-Value=0.77) 28 6.2
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 28 6.2
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_43160| Best HMM Match : Occludin_ELL (HMM E-Value=8.4) 28 6.2
SB_39078| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07) 28 6.2
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_11828| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_6394| Best HMM Match : FlaC_arch (HMM E-Value=0.77) 28 6.2
SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18) 27 8.2
>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
Length = 1279
Score = 31.5 bits (68), Expect = 0.50
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 382 EASIRLKELHEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRKHPNEISVPMSV 552
+A+ R KEL+E + E+ + H +E Y L+Q +E HR NE+ + V
Sbjct: 417 KANERNKELNESVIQTQSEKDTIKHSLHMMEEQYKGLRQQQEDHRSTVNELETKLEV 473
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/80 (21%), Positives = 35/80 (43%)
Frame = +1
Query: 295 VKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEFQ 474
++E L + HR L +R R++E HE + +++E++AL + +
Sbjct: 4002 IEEKLQRDLAHRRDQQTSLLKSRLDERKRNKMRRMREAHEAEKAKQEQEMAALEAGFDAE 4061
Query: 475 EFYSRLKQIKEFHRKHPNEI 534
E + K+ + +H I
Sbjct: 4062 EARGVAEITKKLNEEHKEVI 4081
>SB_34646| Best HMM Match : DUF1233 (HMM E-Value=3)
Length = 209
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +1
Query: 346 DHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRK 519
D R++ L ++ E RL ++ +++DG+RKE + ++ + L+ +FH+K
Sbjct: 37 DSRIEELENQLSELKHRLADVVKERDGMRKELGKEKKPFLQPRKHFCDLEPKAQFHKK 94
>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 328 RETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALS 456
RET+ + +L DRY E + +KE+ E L KEE + LS
Sbjct: 84 RETLIYNAKLSEQCDRYDEMAKIMKEVSEKYPKLSKEERNLLS 126
>SB_59156| Best HMM Match : FlaC_arch (HMM E-Value=0.77)
Length = 339
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 337 INADHRLKNLHDRYIEASIRLKELHEDKDGLRKE 438
I D R++ L ++ E RL ++ +++DG+RKE
Sbjct: 37 IPRDSRIEELENQLSELKHRLADVVKERDGMRKE 70
>SB_5674| Best HMM Match : FlaC_arch (HMM E-Value=0.97)
Length = 273
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 346 DHRLKNLHDRYIEASIRLKELHEDKDGLRKE 438
D R++ L ++ E RL ++ +++DG+RKE
Sbjct: 15 DSRIEGLENQLSELKHRLSDVVKERDGMRKE 45
>SB_58659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 346 DHRLKNLHDRYIEASIRLKELHEDKDGLRKE 438
D R++ L ++ E RL ++ +++DG+RKE
Sbjct: 37 DSRIEELENQLSELKHRLADVVKERDGMRKE 67
>SB_51163| Best HMM Match : Adeno_PIX (HMM E-Value=0.96)
Length = 772
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 413 KIKMDYEKKKYQHCQDHMSSRSSIRDLSKLK 505
K+K DY+ + Y+ Q +S +S ++ L+ LK
Sbjct: 657 KLKDDYDSEDYEDQQSDLSEKSEMQTLNDLK 687
>SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +1
Query: 283 WHAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKE 438
WH EI + E RLK I+A IR + ++K+G+R +
Sbjct: 728 WHPSHDEIEQNQLHRLEAKRRYERLKQQRRSGIQAGIRNTRIRDNKNGVRNQ 779
>SB_9880| Best HMM Match : FlaC_arch (HMM E-Value=0.77)
Length = 272
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 346 DHRLKNLHDRYIEASIRLKELHEDKDGLRKE 438
D R++ L ++ E RL ++ +++DG+RKE
Sbjct: 37 DSRIEELENQLSELKHRLADVVKERDGMRKE 67
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 367 HDRYIEASIRLKELHEDKDGL--RKEEISALSGPHEFQEFYSRLKQIKE 507
H++ +E S RL+ + DKD E +FQ F ++L+Q+++
Sbjct: 687 HEKLVETSARLQRMIPDKDAFINTLRESRTEEYQAKFQAFQAKLEQVRK 735
>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2509
Score = 27.9 bits (59), Expect = 6.2
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 253 EATMRKGKEPWHAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLR 432
+AT R E W M++ +LH T RE + HR++ + + + L+E+ L
Sbjct: 1300 KATTRSMDE-WQKMLEFVLHVTTFIRELSDWLHRVEIILIQQPGLTADLREVQAQLSQLE 1358
Query: 433 K-EEISALSGPHEFQEFYSRLKQIKEFHRKHPNEI 534
E + ++ ++ L Q++E R H ++
Sbjct: 1359 SISEKEIIPRLNKIEDVQLALPQLRELDRAHTQDL 1393
>SB_43160| Best HMM Match : Occludin_ELL (HMM E-Value=8.4)
Length = 116
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 346 DHRLKNLHDRYIEASIRLKELHEDKDGLRKE 438
D R++ L ++ E RL ++ +++DG+RKE
Sbjct: 37 DSRIEELENQLSELKHRLADVVKERDGMRKE 67
>SB_39078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 346 DHRLKNLHDRYIEASIRLKELHEDKDGLRKE 438
D R++ L ++ E RL ++ +++DG+RKE
Sbjct: 15 DSRIEELENQLSELKHRLADVVKERDGMRKE 45
>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
Length = 1447
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +1
Query: 313 KKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEFQEFYSRL 492
K G+ TI +H+L+ + + A LK + + LRK+ + E + + S +
Sbjct: 235 KSDGYSTTIPVEHKLRYIWRQLTRAESSLKSSLDSVEQLRKQHAEEMI---EVENYVSHI 291
Query: 493 KQIKE 507
+Q+ +
Sbjct: 292 RQLSD 296
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 27.9 bits (59), Expect = 6.2
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +1
Query: 286 HAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPH 465
HA+ E ++K+ + + + K +++ +E S+R KE+++DK+ K+E S
Sbjct: 2598 HAIALEDANQKS--EKELRREKMKKERYEKDVE-SLR-KEMNDDKNRAYKQETLIQSIKT 2653
Query: 466 EFQEFYSRLKQ-IKEFHRKH 522
E +F RL+Q IK+ K+
Sbjct: 2654 ENDKFKKRLEQEIKDKENKN 2673
>SB_11828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 346 DHRLKNLHDRYIEASIRLKELHEDKDGLRKE 438
D R++ L ++ E RL ++ +++DG+RKE
Sbjct: 37 DSRIEELENQLSELKHRLADVVKERDGMRKE 67
>SB_6394| Best HMM Match : FlaC_arch (HMM E-Value=0.77)
Length = 149
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 346 DHRLKNLHDRYIEASIRLKELHEDKDGLRKE 438
D R++ L ++ E RL ++ +++DG+RKE
Sbjct: 37 DSRIEELENQLSELKHRLADVVKERDGMRKE 67
>SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18)
Length = 1764
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 542 GTDISFGCFL*NSLICLSLE*NSWNSCGPDNADISSFRNP 423
G I+ GC SL+ L L+ N+ D DI+S+ NP
Sbjct: 1694 GDLIALGCEQPLSLVALRLQARHMNAVMSDTGDITSWGNP 1733
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,273,786
Number of Sequences: 59808
Number of extensions: 275898
Number of successful extensions: 922
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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